PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00186.50
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HSF
Protein Properties Length: 243aa    MW: 28366.5 Da    PI: 5.8682
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00186.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.99.2e-35301212102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl k+y ++ed+++++++sw+++g+ f+v+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF ++ F+kg+kell++i
  Jcr4S00186.50  30 FLLKTYMLVEDPATDHVVSWNDDGTGFIVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNDMFRKGEKELLCQI 116
                    9****************************************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+k 
  Jcr4S00186.50 117 RRRKA 121
                    **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.8E-3723114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5326119IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-3326119IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-183053IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.2E-3130119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-186880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-188193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEPVDDNNNH NNNNKALEYQ YVRKSTPPPF LLKTYMLVED PATDHVVSWN DDGTGFIVWQ  60
PAEFARDLLP TLFKHSNFSS FVRQLNTYGF RKVATSRWEF CNDMFRKGEK ELLCQIRRRK  120
AWSNKQQPNA QIQTTPQESD EDQRSSSTSS SSEYGVLVDE NKRLKKENKV LSSEXXXXXE  180
LLDLVAKYTR FEKEEEEEED ASPKLFGVRL EVAGERERKR KRAEIRECAT ILLYSIMQIS  240
CAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B2e-20301194104Putative transcription factor
5d5x_B2e-20301194104Putative transcription factor
5d5x_E2e-20301194104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012086190.11e-146heat stress transcription factor B-3
SwissprotO222303e-67HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A067K1D91e-145A0A067K1D9_JATCU; Uncharacterized protein
STRINGcassava4.1_015016m1e-119(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-63heat shock transcription factor B3