PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00187.70
Common NameJCGZ_06645, LOC105635139
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 229aa    MW: 25940.2 Da    PI: 4.518
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00187.70genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.42.4e-1861181107
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeek....ewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                    l pG+rF P+d+el v+yL +k++g+  ++ +  ++++d+y + ePw   k++ ++e     ++yfF+k +k++++++r +r++ +g+W+   +  
  Jcr4S00187.70   6 LLPGYRFIPNDKELYVDYLYPKITGQLSPVLQRiVPDCDLYGTeEPWMVWKRFGGDELgglgDLYFFTKLKKTNPRSSRVERSVGKGTWHGENTGV 101
                    579***********************977755549******9978****876655433444578**************************999999 PP

            NAM  91 evlskkgelvglkktLv 107
                    ++l ++  + g+k++L 
  Jcr4S00187.70 102 PLLLEEIGQAGMKRSLR 118
                    999999999****9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-174117IPR003441NAC domain
PROSITE profilePS5100519.3266171IPR003441NAC domain
PfamPF023651.1E-108118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDETLLLPGY RFIPNDKELY VDYLYPKITG QLSPVLQRIV PDCDLYGTEE PWMVWKRFGG  60
DELGGLGDLY FFTKLKKTNP RSSRVERSVG KGTWHGENTG VPLLLEEIGQ AGMKRSLRKK  120
DAFSVSSPGS KKRKLDEEGV ENSLVMEERM EDSSKKRKLH EEGVVVDSFI INEPMGFNMC  180
LSMDELMGYP QSSNGDDEYL DFHNWLAAAE SAVHGQETEQ SSIEDDAWG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117133RKKDAFSVSSPGSKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753580.0KC775358.1 Jatropha curcas NAC transcription factor 080 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012073531.11e-152NAC domain-containing protein 41-like
TrEMBLR4N5T01e-150R4N5T0_JATCU; NAC transcription factor 081
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.26e-10NAC domain containing protein 41
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]