PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00197.90
Common NameJCGZ_21617, LOC105649716
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HSF
Protein Properties Length: 406aa    MW: 46220.2 Da    PI: 4.7855
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00197.90genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.51.2e-34141052102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+ye+++d+++++++sws++++sf+v+ + ef++++Lp++Fkh+nf+SF+RQLn+YgF+k + e+         weF+++ F +gk +l+++i
  Jcr4S00197.90  14 FLSKTYEMVDDPSTDSIVSWSQTNKSFIVWSPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQ---------WEFANEDFVRGKPHLMKNI 100
                    9**************************************************************99988.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+k 
  Jcr4S00197.90 101 HRRKP 105
                    **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.9E-38598IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-349103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.5E-6210103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDESQGSSNS LPPFLSKTYE MVDDPSTDSI VSWSQTNKSF IVWSPPEFSR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKADPE QWEFANEDFV RGKPHLMKNI HRRKPVHSHS MQNLQGQGSN  120
PLTDSERQAL KDDVDRLKNE KEVLILELQR HDCERQGFEL QMQALKEKLQ QMERRQQTMV  180
SFVSRVLQKP GLALNLMSEL ETGHDRKRRL PRIGYFYEEA SIEDNQMATC QGLANGSADI  240
TSTPLSNTEQ FEQLESSLTF WETTVNDVQT NIQRNSTSEL DESISCGESP AISCVQFNVD  300
VRPKSPAIDM NSEPAVASAP EPDPPKEQVS GTAPTAATGV NDVFWEQFLT ENPGATDAQE  360
VQSERKDSGD RKNEIKPSEQ GKFWWNMRNV NNLAEQMGHL TPAERT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-23410320129Heat shock factor protein 1
5d5v_B8e-23410320129Heat shock factor protein 1
5d5v_D8e-23410320129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091841.10.0heat stress transcription factor A-4a
SwissprotO494031e-143HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A067JBG60.0A0A067JBG6_JATCU; Uncharacterized protein
STRINGXP_002522270.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-145heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]