PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00199.60

Common Name

JCGZ_24707

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

MYB

Protein Properties

Length: 226aa MW: 26250.8 Da PI: 7.2467

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00199.60	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.6	9.3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l d+++ G g W+ +++ g++R++k+c++rw++yl Jcr4S00199.60 14 RGAWTAMEDKILTDYIQIQGEGKWRNLPKKAGLNRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	53.4	6e-17	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ Jcr4S00199.60 67 RGNITDDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 7999****************.*****.*********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.692	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	4.3E-28	12	108	IPR009057	Homeodomain-like
SMART	SM00717	4.4E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-13	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-22	15	68	IPR009057	Homeodomain-like
CDD	cd00167	4.26E-8	16	61	No hit	No description
PROSITE profile	PS51294	24.325	62	116	IPR017930	Myb domain
SMART	SM00717	5.8E-14	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-14	67	110	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.0E-25	69	116	IPR009057	Homeodomain-like
CDD	cd00167	5.30E-11	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MGRCPCCPKE GLNRGAWTAM EDKILTDYIQ IQGEGKWRNL PKKAGLNRCG KSCRLRWLNY 60 LRPGIKRGNI TDDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TICKKLQPLN 120 PTVNKSLSTL NTEPNKVFWT KASRCTKVVI PNNPKPQNIN QPEMGNISGD DNENFHFILE 180 ENYNNSSDSF LDFEMDECLL SELLDTDSFN WIEDHQVLLE RREERI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-26	12	116	25	128	MYB TRANSFORMING PROTEIN
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:18541146, ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM034683	0.0	KM034683.1 Jatropha curcas clone JcMYB063 MYB family protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012068888.1	1e-166	transcription factor MYB3
Swissprot	Q9S9K9	3e-59	MYB3_ARATH; Transcription factor MYB3
TrEMBL	A0A067L0J8	1e-165	A0A067L0J8_JATCU; MYB family protein
STRING	cassava4.1_022478m	6e-95	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	2e-60	myb domain protein 6

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Zhou M, et al. Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis. Plant J., 2015. 84(2): p. 395-403 [PMID:26332741] Wada T,Hayashi N,Tominaga-Wada R Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis. Plant Signal Behav, 2015. 10(11): p. e1089372 [PMID:26339713] Wada T,Tominaga-Wada R CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression. Plant Sci., 2015. 241: p. 260-5 [PMID:26706076] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Zhou M, et al. LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis. Plant Physiol., 2017. 174(3): p. 1348-1358 [PMID:28483877] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]