PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00200.90
Common NameJCGZ_13872, LOC105642468
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 468aa    MW: 50263.7 Da    PI: 8.9463
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00200.90genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.8e-095075227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                   + + C +++rtG C yG+rC+++H++
  Jcr4S00200.90 50 GVPDCVYYMRTGCCGYGARCRYNHPR 75
                   5799********************96 PP
2zf-CCCH41.81.8e-1396120327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    ++lC+f+++tGtCk+G++CkF+H++
  Jcr4S00200.90  96 EPLCQFYLKTGTCKFGASCKFHHPK 120
                    79*********************96 PP
3zf-CCCH36.67.4e-12141166227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++C+++++tG+Ck+G +CkF+H+p
  Jcr4S00200.90 141 GEKECSYYLKTGQCKFGITCKFHHPP 166
                    7899********************97 PP
4zf-CCCH36.58.1e-12292318127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +++++C++++rtG Ck+G++C+++H++
  Jcr4S00200.90 292 PGEPECQYYLRTGDCKFGSSCRYHHPR 318
                    5799*********************96 PP
5zf-CCCH32.61.4e-10343364627
                    -SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                    C f++r+G+Ck+G++CkF H++
  Jcr4S00200.90 343 CTFYMRNGHCKFGSTCKFDHPM 364
                    ********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.7E-64875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3664876IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-65075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-55376IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.04293121IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-693120IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-1196120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-697120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-598120IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.084139167IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-9141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-5141166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4145164IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-6291318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817291319IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-9293318IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6295320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-5297318IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4337364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.662337365IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6339365IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4342362IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-8343364IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MEFYGRNQAR NGSQSGQQPQ WNPAAGETGL EESMWRLGLA SSESYPERSG VPDCVYYMRT  60
GCCGYGARCR YNHPRNRAAV EAAVRATGEY PERAGEPLCQ FYLKTGTCKF GASCKFHHPK  120
HGGGSLSHVP LNIHGYPLRP GEKECSYYLK TGQCKFGITC KFHHPPPAGT SMPESAPQFY  180
QPVQSPSIPI PEPYGGASTS LRVRPQLLPG SYVQGAYGPV LFSPGVVPIP GWSHYSAPVS  240
PVMSPGAQPA VGGTSLYVSS STPALVGTYP SPSSVAGLSS GTQKELTFPE RPGEPECQYY  300
LRTGDCKFGS SCRYHHPRDR IVPRTNCVLS PLGLPLRPGV QHCTFYMRNG HCKFGSTCKF  360
DHPMMRYSPS ASSLIDMPVA PYVGSLLATL APSSPSSEVR PELIGATKKD SYLSRIPSSG  420
NTSSSSVGLI FSQTGSVPLS DLQLSGQSSV PLTSGRSTRQ GGEVRRSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082691.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A067JVV80.0A0A067JVV8_JATCU; Uncharacterized protein
STRINGXP_002520668.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]