PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00207.50
Common NameJCGZ_17695, LOC105644544
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 227aa    MW: 25940.9 Da    PI: 6.2529
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00207.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding591.1e-18552148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+++++q+G g+W++ ++  g+ R++k+c++rw +yl
    Jcr4S00207.50  5 KGPWTPEEDHILINYIQQYGHGNWRALPKQAGLLRCGKSCRLRWTNYL 52
                     79******************************99************97 PP
2Myb_DNA-binding52.51.1e-1658103148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l
    Jcr4S00207.50  58 RGNFTRDEEETIIKLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 103
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.11E-31199IPR009057Homeodomain-like
PROSITE profilePS5129425.903156IPR017930Myb domain
SMARTSM007174.8E-14454IPR001005SANT/Myb domain
PfamPF002495.4E-17552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-25659IPR009057Homeodomain-like
CDDcd001675.18E-11752No hitNo description
PROSITE profilePS5129420.79957107IPR017930Myb domain
SMARTSM007171.2E-1457105IPR001005SANT/Myb domain
PfamPF002492.0E-1558103IPR001005SANT/Myb domain
CDDcd001671.52E-1060103No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2660108IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGLKKGPWTP EEDHILINYI QQYGHGNWRA LPKQAGLLRC GKSCRLRWTN YLRPDIKRGN  60
FTRDEEETII KLHEMLGNRW SAIAARLPGR TDNEIKNVWH THLKKRLKQN NSNDLNQENK  120
KRSIDTDRVS QELKPELELA SLPNIGGYHE QGITEDRPVS PRQCSSDVSS VTTVDDGINN  180
LSSMKVESSE NFPEMDDNFW SEVLSSDNSS SADDFPAAAQ LQITVFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2731075108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108LKKRLKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346690.0KM034669.1 Jatropha curcas clone JcMYB049 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085323.11e-166transcription factor MYB14
SwissprotQ9SJX82e-70MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A067JRM01e-164A0A067JRM0_JATCU; MYB family protein
STRINGcassava4.1_013493m1e-107(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-70myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]