PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00216.40

Common Name

JCGZ_04806, LOC105634161

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 250aa MW: 27168.3 Da PI: 7.1278

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00216.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	98	120	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Jcr4S00216.40 98 FSCNYCRRKFYSSQALGGHQNAH 120 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.15E-6	96	126	No hit	No description
PROSITE profile	PS50157	11.385	98	125	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	100	120	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MTPPYSKLES ENESEISSQV ASNISLQEPS PDPSKEGSTP SSSLTDLAKL QQGSTPVSLD 60 LSLNFNSCDI ELKGSTAGET SSEVAPATTP AATIPRVFSC NYCRRKFYSS QALGGHQNAH 120 KRERTMAKRA MRMGIFSDRY TSLASLPLHG SAYRSLGIKA HSAMHQNIIP SQQKPPDMRG 180 GARFEQGYYG MPVFMEDEDV GLHWPGSFRQ VGGSNFGLEF AESSNSNMNV VRISPQPRTD 240 SSAPDLTLKL

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012072362.1	0.0	zinc finger protein 4
Refseq	XP_012072363.1	0.0	zinc finger protein 4
Refseq	XP_012072364.1	0.0	zinc finger protein 4
Refseq	XP_020535010.1	0.0	zinc finger protein 4
Swissprot	Q39263	2e-44	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A067KT79	0.0	A0A067KT79_JATCU; Uncharacterized protein
STRING	XP_002527542.1	1e-136	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1323	31	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	1e-46	zinc finger protein 4

Link Out ? help Back to Top
Entrez Gene	105634161

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]