PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00233.190
Common NameGRAS48, JCGZ_14565
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRAS
Protein Properties Length: 658aa    MW: 71921.9 Da    PI: 5.7962
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00233.190genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS324.91.6e-993066575374
            GRAS   5 LlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                     + ++Ae +++g+  laq +Larl++  + + g+p  R+a+yf+eAL+  l+       +  ++ + ++ + + ++ a+k fse+sPil+f+++t+
  Jcr4S00233.190 306 ICQAAELIETGNPVLAQGILARLNHKlSLSIGKPHIRAAFYFKEALQLLLHL-----NNGTNSPSLTPCSLIFKIGAYKSFSEISPILQFANFTC 395
                     689**********************9455667***************99997.....55555555566779************************ PP

            GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                     Nqa+lea eg +r+HiiDfdi+ G+QW++L+q+La R++g+pslRiT+++sp+s ++ el  t+e+L+ fA+e+++pfe ++l    +e+l+   
  Jcr4S00233.190 396 NQALLEACEGFDRIHIIDFDIGFGGQWASLMQELALRNGGAPSLRITAFASPSSRDEVELGFTQENLRIFASEINMPFELEIL---GFESLNSMP 487
                     **********************************************************************************9...999****** PP

            GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                     +r +++E+++Vnl +  ++ +  + s     +  L++vk+lsPk+vv  ++ +d+++ +F+ ++ ++++ ys+l++slea    +se+ +k+Er+
  Jcr4S00233.190 488 FRGSEKEVIVVNLPIGPFSNY--PSS----LPVALRFVKQLSPKIVVSLDRGCDRTDLPFASHVNNSIQSYSSLLESLEAV-NMNSEALQKIERF 575
                     ***************888887..444....4559********************************************876.6899********* PP

            GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     l+++ i+++v  ++++      +   W++ + ++GF+p+++s++a++qa++l+++++ +g++ve+++ slvl+W++++L+s+SaWr
  Jcr4S00233.190 576 LVQPGIEKIVLGRHRH----PDRTPPWKSLFLQSGFTPIQFSNFAESQADCLVQRTPARGFHVEKRQSSLVLCWQRKELISASAWR 657
                     ***********99998....88999************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.8276637IPR005202Transcription factor GRAS
PfamPF035145.7E-97306657IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MWAVSPPLYL KLEEVPALPT SSSTLSSSQG GSNGGGGAAS TETTTGVAAA VSGNPSVDIS  60
TEKCGQLGME YWDGVLPGSP SQEPSILRLI MGDVEDPSLG LNKLLQGGSG SSQDMEFNAG  120
FGVVDQGFGF EPMNSTNLVN SIDSSSSVHG TSPEFPLLNH NVRIGPVLTQ NPNQVISASA  180
GNLFPGMFQN QPPPQIEAAD EKPQIFNPQI IINQNQAQLG QNPAMFLPLS YAQLQEHHLL  240
SPPPTKRLNS GPVGANYQMA RPEFFVQRQQ QQLQMLQQQR PAMMKQKIMT DELAAQQIQQ  300
AILNPICQAA ELIETGNPVL AQGILARLNH KLSLSIGKPH IRAAFYFKEA LQLLLHLNNG  360
TNSPSLTPCS LIFKIGAYKS FSEISPILQF ANFTCNQALL EACEGFDRIH IIDFDIGFGG  420
QWASLMQELA LRNGGAPSLR ITAFASPSSR DEVELGFTQE NLRIFASEIN MPFELEILGF  480
ESLNSMPFRG SEKEVIVVNL PIGPFSNYPS SLPVALRFVK QLSPKIVVSL DRGCDRTDLP  540
FASHVNNSIQ SYSSLLESLE AVNMNSEALQ KIERFLVQPG IEKIVLGRHR HPDRTPPWKS  600
LFLQSGFTPI QFSNFAESQA DCLVQRTPAR GFHVEKRQSS LVLCWQRKEL ISASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-3631765718375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052830.0KM405283.1 Jatropha curcas GRAS48 protein (GRAS48) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020538448.10.0LOW QUALITY PROTEIN: scarecrow-like protein 6
TrEMBLA0A067KAG00.0A0A067KAG0_JATCU; GRAS48 protein
STRINGcassava4.1_034057m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-133GRAS family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]