PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00240.250

Common Name

JCGZ_08069, LOC105635214

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

WOX

Protein Properties

Length: 208aa MW: 23715.7 Da PI: 4.9109

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00240.250	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.6e-19	72	132	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++ ql++Le+ F n +p++++++e++++l ++e++V++WFqNrRa+ k+ Jcr4S00240.250 72 RQRWAPKAAQLQILESIFGDcNTTPDRQKIREITSELakhgPVSETNVYNWFQNRRARSKR 132 89***************88**************999***************97 PP
2	Wus_type_Homeobox	90.4	1.7e-29	71	134	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P++ Q++iLe+++ tP +++i++it+eL+++G ++++NV++WFQNr+aR+++kq Jcr4S00240.250 71 SRQRWAPKAAQLQILESIFGDCNTTPDRQKIREITSELAKHGPVSETNVYNWFQNRRARSKRKQ 134 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-15	68	136	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.009	68	133	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.5E-16	70	137	IPR009057	Homeodomain-like
SMART	SM00389	4.1E-13	70	137	IPR001356	Homeobox domain
CDD	cd00086	6.41E-12	72	134	No hit	No description
Pfam	PF00046	5.5E-17	72	132	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MENGVVGVKV MTDEQMEMLR KQISVYATIC ENLVQMHQAI CSQQDFTGIQ VANLYGYSGP 60 YISNGLQRIP SRQRWAPKAA QLQILESIFG DCNTTPDRQK IREITSELAK HGPVSETNVY 120 NWFQNRRARS KRKQAALPTL TNTGESQAEP AEDKNTNQDD TIAQMDESLE FMVNDMYFQN 180 PEIQGIEQLI GRPEVTINYK PHWPDLFG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	133	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012073636.1	1e-157	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	1e-54	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A067KP72	1e-156	A0A067KP72_JATCU; Uncharacterized protein
STRING	cassava4.1_016031m	2e-85	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	1e-48	WUSCHEL related homeobox 14

Link Out ? help Back to Top
Entrez Gene	105635214

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]