PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00242.60
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 387aa    MW: 42510.3 Da    PI: 10.1066
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00242.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61e-057496123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C+k F r  nL+ H r H
  Jcr4S00242.60 74 FVCEICNKGFQRDQNLQLHRRGH 96
                   89*******************88 PP
2zf-C2H212.60.00041150172123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k +  +s+ k H +t+
  Jcr4S00242.60 150 WKCEKCSKIYAVQSDWKAHSKTC 172
                    58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-57396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.55E-67396No hitNo description
PROSITE profilePS5015710.9497496IPR007087Zinc finger, C2H2
SMARTSM003550.0177496IPR015880Zinc finger, C2H2-like
PfamPF121715.8E-57496IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM00355280115145IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-4138171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.55E-6145170No hitNo description
SMARTSM00355170150170IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MFPAAMSNST SLSEEASVSS GNRVVQDFCG INPVVNQQQQ GQKVKKKRSL PGNPDPDAEV  60
IALSPKTLLA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRNSKEI KKRAYVCPEP  120
SCVHHHPSRA LGDLTGIKKH YCRKHGEKKW KCEKCSKIYA VQSDWKAHSK TCGTREYRCD  180
CGTLFSRFHS TLGIHFIIIV IKTLAVTLLK TRLFKSSLRL TISSYHRHFS SKNLSPFQTL  240
SNPATSVATA SHHLSATALL QKAATVGATQ TTVGHSQMTQ LDMTELGSAD SVAQQHGSSF  300
LGNLATWHKN DRLTRDFLGL TGDANGNVAN GSGGGAAVNV SVNVREMLTY TGGVGLQQYA  360
IERDHTLLKS HGFGFAQPPA SETWGDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-21146192349Zinc finger protein JACKDAW
5b3h_F1e-21146192349Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020541274.10.0protein indeterminate-domain 12 isoform X2
SwissprotO227591e-115IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A067JF430.0A0A067JF43_JATCU; Uncharacterized protein
STRINGcassava4.1_007413m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-102indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]