PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00247.50
Common NameJCGZ_07732
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HD-ZIP
Protein Properties Length: 827aa    MW: 91068.2 Da    PI: 6.4175
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00247.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.6e-192179357
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Jcr4S00247.50 21 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 79
                   5679*****************************************************97 PP
2START184.27.2e-581663742205
                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 
                    +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+++s+g  g+++l +
  Jcr4S00247.50 166 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPT-RVAEILKDRPSWYRDCRAVDVLNALSTGngGTIELLY 260
                    7899******************************************************.8888888888*************************** PP

                    EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
          START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                    ++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+   ++++vRae lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s
  Jcr4S00247.50 261 MQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmppTQHFVRAEILPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYES 356
                    ******************************************99999************************************************* PP

                    HHHHHHHHHHHHTXXXXX CS
          START 188 glaegaktwvatlqrqce 205
                    ++  ++kt++a+l+++++
  Jcr4S00247.50 357 STLLAQKTTMAALRHLRQ 374
                    *************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.921680IPR001356Homeobox domain
SMARTSM003895.3E-161884IPR001356Homeobox domain
SuperFamilySSF466895.13E-172084IPR009057Homeodomain-like
CDDcd000865.51E-172181No hitNo description
PfamPF000461.1E-162279IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.7E-192379IPR009057Homeodomain-like
CDDcd146861.13E-673112No hitNo description
PROSITE profilePS5084826.27156384IPR002913START domain
CDDcd088756.01E-81160375No hitNo description
SMARTSM002341.7E-44165375IPR002913START domain
Gene3DG3DSA:3.30.530.203.9E-24165371IPR023393START-like domain
SuperFamilySSF559615.91E-39165377No hitNo description
PfamPF018522.1E-55166374IPR002913START domain
PfamPF086703.1E-52686826IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010067Biological Processprocambium histogenesis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010089Biological Processxylem development
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MMAVTSACKD GGNKIQMDNG KYVRYTPEQV EALERLYHEC PKPSSMRRQQ LIRECPILSN  60
IEPKQIKVWF QNRRCREKQR KEASRLQAVN RKLTAMNKLL MEENDRLQKQ VSELVYENSY  120
FRQQTQNATN LATTDTSCES VVTSGQHHLT PQHPPRDASP AGLLSIAEET LAEFLSKATG  180
TAVEWVQMPG MKPGPDSIGI VAISHGCPGV AARACGLVGL EPTRVAEILK DRPSWYRDCR  240
AVDVLNALST GNGGTIELLY MQLYAPTTLA PARDFWLLRY TSVLEDGSLV VCERSLNNTQ  300
NGPSMPPTQH FVRAEILPSG YLIRPCEGGG SIIHIVDHMD LEPWSVPEVL RPLYESSTLL  360
AQKTTMAALR HLRQISQEVS HPNVSGWGRR PAALRALSQR LSKGFNEAVN GFNDEGWTML  420
ESDGIDDVTV LVNSSPGKMM GLNISYASGF PSMSNGVLCA KASMLLQNVP PAILLRFLRE  480
HRSEWADSGI DAYAAAAVKA GPCTLPVSRA GNFGGQFMEV IKLENMGYRE DMIMPGDIFL  540
LQLCSGVDEN SIGTCAELIF APIDASFSDD APIIPSGFRI IPLDSRVDAS SPNRTLDLAS  600
ALEIGPSGNK ASGDFSGHCG STKSVMTIAF QFAFEMHLQD NVASMARQYV RSVIASVQRV  660
ALALSPSRFG SHEGFRTPPG TPEAHTLARW ICQSYRCYLG VELLKSEGSE SILKSLWHHS  720
DAVMCCSLKA LPVFTFANQA GLDMLETTLV ALQDITLEKI FDDNGRKTLC SEFPQIMQQG  780
FMCLQGGICL SSMGRPVSYE RAVAWKVLNE EETAHCICFM FINWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9196230.0AY919623.1 Populus trichocarpa class III HD-Zip protein 8 (HB8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077376.10.0homeobox-leucine zipper protein ATHB-8
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A067KD600.0A0A067KD60_JATCU; Uncharacterized protein
STRINGcassava4.1_001673m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  5. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  6. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  7. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  8. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  9. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]