PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00259.40
Common NameJCGZ_02922
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 206aa    MW: 23875.7 Da    PI: 9.9367
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00259.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.81.2e-2471351128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                    lp G+rF Ptdeelv++yL++kve+++l+   v+++ diy+ +Pw++     ++ +   y F++ +kk+++ +r  r++ sg+Wk+  + k+    
  Jcr4S00259.40   7 LPCGYRFVPTDEELVNFYLRRKVEKQPLPR-GVVRTRDIYSKNPWEIFD---KSCNgFFYVFTTLRKKQNSRTRFDRTAGSGTWKNRFS-KSFPGD 97 
                    699*************************99.99**************62...2334155999999999999**************9877.555555 PP

            NAM  96 kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                    +g+  + kk  vf      +  +++  + +W+m+e++l
  Jcr4S00259.40  98 DGKSFWFKKDYVFElnknqSSADSSIDNGHWIMQEFSL 135
                    99***********95543222333345889******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-303146IPR003441NAC domain
PROSITE profilePS5100525.7727162IPR003441NAC domain
PfamPF023651.3E-168135IPR003441NAC domain
SuperFamilySSF514455.79E-10120196IPR017853Glycoside hydrolase superfamily
PfamPF003323.3E-16142202IPR000490Glycoside hydrolase family 17
Gene3DG3DSA:3.20.20.801.1E-15142203IPR013781Glycoside hydrolase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MAERSELPCG YRFVPTDEEL VNFYLRRKVE KQPLPRGVVR TRDIYSKNPW EIFDKSCNGF  60
FYVFTTLRKK QNSRTRFDRT AGSGTWKNRF SKSFPGDDGK SFWFKKDYVF ELNKNQSSAD  120
SSIDNGHWIM QEFSLEDEGV KSGWPSKGDD AGTLDNGGTY YKNSINYVKQ GTPKKSGQAI  180
KTYLFGLFDE NLKERSRIPT SWSLRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-16713515140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753600.0KC775360.1 Jatropha curcas NAC transcription factor 082 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067029.11e-101NAC domain-containing protein 41
TrEMBLA0A067L1901e-147A0A067L190_JATCU; Uncharacterized protein
STRINGcassava4.1_027890m8e-34(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1653238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-18NAC domain containing protein 47
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]