PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00265.110
Common NameJCGZ_23183, LOC105647390
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 154aa    MW: 16820 Da    PI: 8.1958
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00265.110genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.81.4e-115879526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                    +C++f +tG+C+yGd+Ck+ H+
  Jcr4S00265.110 58 ICNRFVKTGFCPYGDSCKYLHP 79
                    7********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.66E-12444No hitNo description
PfamPF062202.0E-7537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010314.6335381IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-55580IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-75781IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-85878IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-95879IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MPLGKYYCDY CEKEFQDTAI ARKRHLQSAS HVRAKSLWYA SLRSGDPSQT YADGAKGICN  60
RFVKTGFCPY GDSCKYLHPN NSNNLQNNVG TSQAAGLMDN VQSPFIPGSQ LVGGSSLPGE  120
MLRDSMGMPW GNLPPSLKPP PEGGYLPLPF VDWG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619842.11e-87zinc finger CCCH domain-containing protein 3 isoform X1
SwissprotQ0JP115e-45C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A067JTM51e-111A0A067JTM5_JATCU; Uncharacterized protein
STRINGcassava4.1_018103m5e-87(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119592833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.19e-51C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]