PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00282.90
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 677aa    MW: 77158.7 Da    PI: 6.6989
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00282.90genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM122.92.7e-385006282128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                    + G+rF+P d el+ +yL kk+ + +l+l ++i+e+d+++++P +Lp ++++ ++  e yfF++r++ky+ ++ ++r+t++gyWkatg d +v++k
  Jcr4S00282.90 500 TIGYRFSPYDYELILYYLLKKILDLPLPL-NIITEIDLHQYDPDQLPiSEFSYGKPgEAYFFTQRERKYSCNSLSKRTTTTGYWKATGLDVKVFHK 594
                    68***************************.89***************655555444599************************************8 PP

            NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + ++g kkt+vfy g+ap+g ++ W+mheyrl
  Jcr4S00282.90 595 kLHIHIGFKKTMVFYWGKAPEGIRSPWIMHEYRL 628
                    44556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.20.20.804.4E-20027479IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514459.43E-17629479IPR017853Glycoside hydrolase superfamily
PfamPF002325.9E-15233480IPR001360Glycoside hydrolase family 1
PROSITE patternPS0065303953IPR033132Glycosyl hydrolases family 1, N-terminal conserved site
PRINTSPR001315.4E-15330344IPR001360Glycoside hydrolase family 1
PRINTSPR001315.4E-15408416IPR001360Glycoside hydrolase family 1
PRINTSPR001315.4E-15431442IPR001360Glycoside hydrolase family 1
PRINTSPR001315.4E-15453470IPR001360Glycoside hydrolase family 1
SuperFamilySSF1019411.22E-40496657IPR003441NAC domain
PROSITE profilePS5100542.768499657IPR003441NAC domain
PfamPF023654.1E-19501628IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009507Cellular Componentchloroplast
GO:0048046Cellular Componentapoplast
GO:0003677Molecular FunctionDNA binding
GO:0004565Molecular Functionbeta-galactosidase activity
GO:0033907Molecular Functionbeta-D-fucosidase activity
GO:0042973Molecular Functionglucan endo-1,3-beta-D-glucosidase activity
GO:0080079Molecular Functioncellobiose glucosidase activity
GO:0080083Molecular Functionbeta-gentiobiose beta-glucosidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MAIRRRGIAA VILVLVFAFE IETICLAQSI NRGSFPKGFV FGTASSAFQY EGAVKEDGRG  60
PSVWDKFSHS FGKILDFSNA DVAVDHYHRF NEDIQLMKDM GMDAYRFSIS WSRIYPNGTG  120
TINQAGIDHY NKVINALLAA GIVPYVTLYH WDLPQALDDR YNGWLSPQII KDFATFAETC  180
FREFGDRVKH WITFNEPHTF TIQGYDVGLQ APGRCSIILH LFCRAGNSAT EPYIVAHNVL  240
LSHGTVADIY RKKYKAKQGG SIGIALDVMW FEPASNSTED IEATQRAQDF QLGWFIEPLI  300
FGDYPSSMRT RVGDRLPKFS KSEAALVKGS LDFVGINHYT TYFAEHNSTN IINSLLNDSL  360
SDSGANTLPF KGLKPIADRA SSIWLYIVPE GMRSLMNYIK RKYGNIPIII TENGMDDPND  420
PLKPIKEALK DEKRIKYHND YLTNLLASIK EDGCNVKGYF VWSLLDNWEW AAGYTSRFDL  480
GLDSNPTAGE IRVEEDLNLT IGYRFSPYDY ELILYYLLKK ILDLPLPLNI ITEIDLHQYD  540
PDQLPISEFS YGKPGEAYFF TQRERKYSCN SLSKRTTTTG YWKATGLDVK VFHKKLHIHI  600
GFKKTMVFYW GKAPEGIRSP WIMHEYRLNP FLFPEAQQDD TLKSKIESYV VCRIRDKSDS  660
LDGIERPGQG LDEKNKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gno_A0.03048012462Os03g0212800 protein
3gnp_A0.03048012462Os03g0212800 protein
3gnr_A0.03048012462Os03g0212800 protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7753291e-164KC775329.1 Jatropha curcas NAC transcription factor 051 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067760.10.0beta-glucosidase 40
SwissprotQ9FZE00.0BGL40_ARATH; Beta-glucosidase 40
TrEMBLA0A067KYS10.0A0A067KYS1_JATCU; Uncharacterized protein
STRINGXP_002512097.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.13e-27NAC domain containing protein 25
Publications ? help Back to Top
  1. Xu Z, et al.
    Functional genomic analysis of Arabidopsis thaliana glycoside hydrolase family 1.
    Plant Mol. Biol., 2004. 55(3): p. 343-67
    [PMID:15604686]
  2. Bindschedler LV,Palmblad M,Cramer R
    Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study.
    Phytochemistry, 2008. 69(10): p. 1962-72
    [PMID:18538804]