PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00294.10

Common Name

JCGZ_02290, LOC105632225

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 196aa MW: 21905.7 Da PI: 5.5386

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00294.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.00019	37	59	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H++ H Jcr4S00294.10 37 YECTFCRRGFTNAQALGGHMNIH 59 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.7E-5	30	63	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.17E-7	34	64	No hit	No description
PROSITE profile	PS50157	11.448	37	64	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	39	59	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MGSGKQGSSE SSSDENNKDQ QEEQVKETTI SSSKRSYECT FCRRGFTNAQ ALGGHMNIHR 60 KDRAKTKQVS GSNSISSKIN EEDINPNHVR SISSEPINHC PVIEAQKNYH PMYFQASRGS 120 SSIPMDAHGY YHASDFLVSK NQSLSLNDEQ LWGANLSLQI GSNNLEENNE TISKEVSKED 180 EVDLELRLGH DHWSDS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012069937.1	1e-144	transcriptional regulator TAC1
TrEMBL	A0A067KVZ0	1e-143	A0A067KVZ0_JATCU; Uncharacterized protein
STRING	cassava4.1_029938m	8e-77	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1686	30	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	2e-15	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	105632225

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]