PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00295.180

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

G2-like

Protein Properties

Length: 300aa MW: 34308.1 Da PI: 9.6123

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00295.180	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.2	1.8e-33	46	99	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+ave+LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR+ Jcr4S00295.180 46 PRLRWTPDLHHCFVHAVERLGGEDRATPKMVLQIMNVKGLTISHVKSHLQMYRS 99 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-32	42	101	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.946	42	102	IPR017930	Myb domain
SuperFamily	SSF46689	1.06E-15	44	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.2E-25	46	100	IPR006447	Myb domain, plants
Pfam	PF00249	3.1E-8	47	98	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MKSRTSPSSS LHNYDPRVTR RRIGDNLSGI TLKSPMVRPY VRSKMPRLRW TPDLHHCFVH 60 AVERLGGEDR ATPKMVLQIM NVKGLTISHV KSHLQMYRSM KHEQMIQEAA IAAKKNEKAS 120 GIHHSNYFSH LLDSTCCQQN HQLKEKGFIN NASVLYQGHG AQDSPTNRVA LMNTTMSVQR 180 KQKGEMWIGN KSLTESFSHE QVKSKEWEQK RTDSYIIFND ILLKRCTTQE SNGEDNNMAS 240 SVDGTEWDKN HEDFVEIAKR EEADKMSLLL KPKASVESLL KLKKAENLYV EDVSLELTLG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-20	47	102	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-20	47	102	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-20	47	102	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-20	47	102	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-20	47	102	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-20	47	102	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-20	47	102	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-20	47	102	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-20	47	102	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-20	47	102	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-20	47	102	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-20	47	102	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012092370.1	0.0	putative Myb family transcription factor At1g14600 isoform X1
TrEMBL	A0A067JAG4	0.0	A0A067JAG4_JATCU; Uncharacterized protein
STRING	cassava4.1_021436m	1e-126	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9381	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	5e-33	G2-like family protein