PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00296.170
Common NameJCGZ_04486, LOC105633853
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family TALE
Protein Properties Length: 432aa    MW: 48377 Da    PI: 7.3067
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00296.170genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.27.9e-103583951954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +e+  LA+++gLt++qV++WF N R +
  Jcr4S00296.170 358 FEHflHPYPNDSEKLMLASQTGLTKNQVSNWFINARVR 395
                     554459******************************88 PP
2BELL108.73.6e-35220291172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     er++lq k+akL+ llee++ rY++y++q+++v+ssFe++aglg+ak+YtslAl+a+SrhF +L+d i++qi
  Jcr4S00296.170 220 ERHDLQVKIAKLIALLEEIEGRYEKYYHQMEQVVSSFEEIAGLGAAKSYTSLALQAMSRHFCNLRDVIVSQI 291
                     799********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.1E-38151289IPR006563POX domain
PfamPF075265.9E-40157287IPR006563POX domain
PROSITE profilePS5007112.017336399IPR001356Homeobox domain
CDDcd000862.68E-11339400No hitNo description
SMARTSM003891.1E-9339403IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-27344405IPR009057Homeodomain-like
SuperFamilySSF466891.24E-17344406IPR009057Homeodomain-like
PfamPF059204.8E-17356395IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MVSQDSLPNP ATNLRRSNTF PQPLGVLPNI QSLGERMSRS IDLVQAPTVP PESEISHTRH  60
LMDLLGAANA TNHQLSLSLG SHMLAPQVQY RQRSVNSDLV SPSYMIPGEE ARKACNPEVE  120
RANDDYSFSG NAFALSSTVF TRSSYTSYGT ESFAIAIKNS RYLKPAQILL EEIVSVSSKA  180
VEINNEKYVV KLLPGGRRGA LGLSSELKAE LCCNGLVPAE RHDLQVKIAK LIALLEEIEG  240
RYEKYYHQME QVVSSFEEIA GLGAAKSYTS LALQAMSRHF CNLRDVIVSQ INETRRKFSQ  300
DLPKISTGLS RLSLFDRESG HNRMSLQQLG MFQSQRQAWR PIRGLPETSV AILRSWLFEH  360
FLHPYPNDSE KLMLASQTGL TKNQVSNWFI NARVRLWKPM IEEMYREEFA ESCEDSNPSI  420
LGSSSMAMEG VN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16345406566Homeobox protein Meis2
3k2a_B2e-16345406566Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071939.10.0BEL1-like homeodomain protein 11
SwissprotQ1PFD11e-109BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A067KQR40.0A0A067KQR4_JATCU; Uncharacterized protein
STRINGXP_002510447.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126452329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-105BEL1-like homeodomain 11
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]