PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00306.110
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 277aa    MW: 30259.3 Da    PI: 6.1555
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00306.110genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431.1e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+++v+++G+g Wk I +        + R+  ++k++w+++
   Jcr4S00306.110  5 KQKWTAEEEEALLNGVAKHGPGKWKNILKDPDfapflTQRSNIDLKDKWRNL 56
                     79***********************************99***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.067161IPR017930Myb domain
SuperFamilySSF466891.29E-16262IPR009057Homeodomain-like
SMARTSM007171.3E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-16457IPR009057Homeodomain-like
PfamPF002495.9E-10556IPR001005SANT/Myb domain
CDDcd116605.42E-21656No hitNo description
SuperFamilySSF467853.59E-5109148IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.9E-4112147IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGNQKQKWTA EEEEALLNGV AKHGPGKWKN ILKDPDFAPF LTQRSNIDLK DKWRNLSVSN  60
ATQGSKDKSR LPKVKTLALT LPSSNAQNFA HADTSADVLM DDPSSNAVDG KNAPRYNAMI  120
FEALSAIKDT NGCDIGAIVH FIELKGELIP GSDVRTSELR GLRCLIAKDC QCDLLVQNCY  180
RICQDGALGT KTPTPKQKDI RPRHSQNSIL ASGESVEEAA IAAAYKVAEA ENKSFLAAEA  240
VKESERVSKV AEDTDSMLQL VKEIYEQCSR GEIVLLA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068940.11e-172telomere repeat-binding factor 4
TrEMBLA0A067KX391e-170A0A067KX39_JATCU; Uncharacterized protein
STRINGcassava4.1_023473m1e-141(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.13e-65MYB_related family protein