PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00313.60

Common Name

JCGZ_22505

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

MYB_related

Protein Properties

Length: 88aa MW: 10407.6 Da PI: 4.2857

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00313.60	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.2	7.7e-08	8	52	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rW+ eE +++ ++ l ++ W+++a+ ++ ++ ++k+++ + Jcr4S00313.60 8 SRWSWEENKIFETNFEFLIKEEWEKVAALLP-DKSVDDVKLHYEHL 52 59***************************.*********765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.249	2	53	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.0E-4	3	54	IPR009057	Homeodomain-like
SMART	SM00717	6.4E-5	6	55	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.84E-8	8	57	IPR009057	Homeodomain-like
CDD	cd00167	2.08E-5	9	53	No hit	No description
Pfam	PF00249	1.5E-5	9	50	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MAQKAKPSRW SWEENKIFET NFEFLIKEEW EKVAALLPDK SVDDVKLHYE HLLEDLKLIG 60 SGHVPLPKYV EEEEEEEEED GQVKSDHL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017432437.1	3e-14	PREDICTED: protein RADIALIS-like 4
TrEMBL	A0A067JSL3	4e-55	A0A067JSL3_JATCU; Uncharacterized protein
STRING	XP_002531923.1	2e-20	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17533	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49010.1	2e-13	MYB family protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]