PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00318.20
Common NameJCGZ_03455
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family RAV
Protein Properties Length: 319aa    MW: 37594.4 Da    PI: 8.2594
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00318.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.11.7e-113581153
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53
                   s+y+GV w k +g+W A+I        r k ++lg+++t+eeA  a+++a  kl
  Jcr4S00318.20 35 SKYRGVIWLK-SGKWGARIAF------RyKAYWLGTYDTEEEAGMAYDRACIKL 81
                   89********.7******999......34********************98877 PP
2B370.62e-22151243186
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                    f k+lt+ d++  + + +pk++a e+       ++++++s++lt++d+++  W+++++y+k+ +++v+tkGW++F k n+Lk +D v F++ +
  Jcr4S00318.20 151 FRKELTQTDATHIKGFHIPKEYAIEYfpplsagDENENKSIELTFYDKHSCPWTFRYSYWKSTQTFVFTKGWRHFLKMNNLKPKDCVFFYRCE 243
                    889*****************************988899***************************************************9554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.76E-183591No hitNo description
SuperFamilySSF541719.81E-173592IPR016177DNA-binding domain
PfamPF008471.2E-73581IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-153692IPR001471AP2/ERF domain
PROSITE profilePS5103215.8963691IPR001471AP2/ERF domain
SMARTSM003801.1E-133697IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.3E-27148245IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-24149244IPR015300DNA-binding pseudobarrel domain
CDDcd100172.50E-21150241No hitNo description
PROSITE profilePS5086311.152151260IPR003340B3 DNA binding domain
PfamPF023623.6E-19151244IPR003340B3 DNA binding domain
SMARTSM010191.0E-11151250IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MELEWHSDSS MSSNSNIISN NQRMKENYSS TSTWSKYRGV IWLKSGKWGA RIAFRYKAYW  60
LGTYDTEEEA GMAYDRACIK LQRSDAPLNF PMHMYSVQET KFQSHYSNED ILDMIKDKSY  120
LSKFEKYIAD QSLVSELGGM AQRGLSYRML FRKELTQTDA THIKGFHIPK EYAIEYFPPL  180
SAGDENENKS IELTFYDKHS CPWTFRYSYW KSTQTFVFTK GWRHFLKMNN LKPKDCVFFY  240
RCEHQKESQG RGFYYMIDAQ RVSVDGDSGN VDKARQLMRK KLNNEELVED MEEEKTSNNN  300
GVMLFGVQIG KTSEYKQFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-1615024713108DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070138.20.0AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A067L7380.0A0A067L738_JATCU; Uncharacterized protein
STRINGcassava4.1_030966m1e-147(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16118910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.12e-54RAV family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]