PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00326.60
Common NameJCGZ_23252, LOC105647452
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GATA
Protein Properties Length: 159aa    MW: 18001 Da    PI: 10.2905
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00326.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.97.8e-202761135
           GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                   C+ C+ttkTplWR gp g+k+LCnaCG++yrkk++
  Jcr4S00326.60 27 CTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKKRR 61
                   ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.9E-152172IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.18E-142163No hitNo description
Gene3DG3DSA:3.30.50.103.2E-162375IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034402752IPR000679Zinc finger, GATA-type
PfamPF003209.0E-182761IPR000679Zinc finger, GATA-type
CDDcd002022.19E-122775No hitNo description
PROSITE profilePS5011412.6512775IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MVYGLMDLSE RKSWCEENGS VEIKKYCTDC KTTKTPLWRG GPAGPKSLCN ACGIRYRKKR  60
RAMLGLEKDS VKKKRTHITS LTTITTSSAN TSNNTSDSNC NADELKESLK MRLIVVDGKM  120
MFQRSSIVKK QRCQRRRKLR EEEQAAFCLM ALSCGSIFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15874KRRAMLGLEKDSVKKKR
27276KKRTH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012088941.11e-115GATA transcription factor 16 isoform X1
TrEMBLA0A067JV471e-113A0A067JV47_JATCU; Uncharacterized protein
STRINGGorai.013G127900.11e-52(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.13e-17GATA transcription factor 15
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]