PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00335.50
Common NameJCGZ_07659, LOC105638137
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 390aa    MW: 43390 Da    PI: 9.871
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00335.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-0581103123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C++C+k F r  nL+ H r H
  Jcr4S00335.50  81 FICEICNKGFQRDQNLQLHRRGH 103
                    89*******************88 PP
2zf-C2H212.90.00032157179123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k++  +s+ k H + +
  Jcr4S00335.50 157 WKCEKCSKRYAVQSDWKAHSKIC 179
                    58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.89E-780103No hitNo description
Gene3DG3DSA:3.30.160.609.8E-680103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.84581103IPR007087Zinc finger, C2H2
PfamPF121714.4E-581103IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.02281103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM0035594122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.2E-5145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.89E-7152177No hitNo description
SMARTSM00355130157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MMKGLAMDEN ISNLTSASGE ISASSRSRIE TSTLYSQQSF PPSNQSPPPP PKKKRNLPGN  60
PDPEAEVIAL SPKTLLATNR FICEICNKGF QRDQNLQLHR RGHNLPWKLK QRTNKEVRKK  120
VYVCPEATCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS DWKAHSKICG  180
TREYRCDCGT LFSRRDSFIT HRAFCDALAE ESARAITLNP SSSSTSNHMI NLQALSSVKR  240
EQESHHRPFI NNNNSNVPPW LVGEAAPAGP NFSQLFPTNI NNLDQAYLQN DQNPSPNPNL  300
SLPRFQPPVA FAHMSATALL QKAAQMGVTM SCNKPSPSPS SRPHKAHMSE TTTGFSSTSV  360
ATSTAGSGLN LSSSEDIRRW VWSWLDIICE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-36153219369Zinc finger protein JACKDAW
5b3h_F4e-36153219369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107119KLKQRTNKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077271.10.0protein indeterminate-domain 7
SwissprotQ8H1F51e-125IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A067KGF20.0A0A067KGF2_JATCU; Uncharacterized protein
STRINGcassava4.1_005370m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-111indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]