PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00336.60

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

CPP

Protein Properties

Length: 148aa MW: 16645.2 Da PI: 8.7689

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00336.60	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51.5	2e-16	19	57	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +++CnCk+skClk+YCeCfaag++C +C+Ce+C+N+ e Jcr4S00336.60 19 CRRCNCKRSKCLKLYCECFAAGVYCVRSCTCENCFNRPE 57 789*********************************876 PP
2	TCR	52.8	7.7e-17	105	144	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkkskClkkYCeC++a++ Cs+ C+Ce+C+N+ Jcr4S00336.60 105 RHKRGCNCKKSKCLKKYCECYQAKVGCSSGCRCEGCNNSF 144 589***********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.4E-15	17	58	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	34.63	18	145	IPR005172	CRC domain
Pfam	PF03638	1.7E-12	20	55	IPR005172	CRC domain
SMART	SM01114	5.0E-16	105	146	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.8E-12	107	143	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MVCYISRKRT KPVDDSEGCR RCNCKRSKCL KLYCECFAAG VYCVRSCTCE NCFNRPEYED 60 TVLDTRQQIQ ARNPLAFAPK VVIPGMNSPA NLLEDGNWTT PSSARHKRGC NCKKSKCLKK 120 YCECYQAKVG CSSGCRCEGC NNSFGKKT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	4e-19	22	142	14	120	Protein lin-54 homolog
5fd3_B	4e-19	22	142	14	120	Protein lin-54 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP011975	2e-98	AP011975.1 Jatropha curcas DNA, clone: JHL25H03, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020535281.1	1e-100	protein tesmin/TSO1-like CXC 3 isoform X1
Refseq	XP_020535282.1	1e-100	protein tesmin/TSO1-like CXC 3 isoform X2
Refseq	XP_020535283.1	1e-100	protein tesmin/TSO1-like CXC 3 isoform X3
Refseq	XP_020535284.1	1e-101	protein tesmin/TSO1-like CXC 3 isoform X4
Swissprot	F4JIF5	7e-56	TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBL	B9RV08	1e-85	B9RV08_RICCO; Tso1, putative
STRING	XP_002517577.1	2e-86	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14277	14	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	3e-58	TESMIN/TSO1-like CXC 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]