PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00360.130
Common NameJCGZ_16571
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 239aa    MW: 27901.2 Da    PI: 5.6739
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00360.130genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEde+lv  v+++G + W+ Ia   g++R++k+c++rw++yl
   Jcr4S00360.130 15 KGPWLEEEDEQLVTFVTLFGERKWDFIATASGLKRSGKSCRLRWLNYL 62
                     79********************************************97 PP
2Myb_DNA-binding54.72.4e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg  ++eE+++++++++++G++ W++Iar+++ gRt++++k++w+++l
   Jcr4S00360.130  68 RGHISAEEEQIIIQLHELWGNK-WAKIARKLP-GRTDNEIKNYWRTHL 113
                      67779*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.3481062IPR017930Myb domain
SuperFamilySSF466897.26E-2813109IPR009057Homeodomain-like
SMARTSM007171.5E-131464IPR001005SANT/Myb domain
PfamPF002498.5E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-211669IPR009057Homeodomain-like
CDDcd001675.88E-91762No hitNo description
PROSITE profilePS5129428.05363117IPR017930Myb domain
SMARTSM007176.8E-1767115IPR001005SANT/Myb domain
PfamPF002491.3E-1568113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-2570117IPR009057Homeodomain-like
CDDcd001675.60E-1272113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MACQATSIHG DKLRKGPWLE EEDEQLVTFV TLFGERKWDF IATASGLKRS GKSCRLRWLN  60
YLRPNLKRGH ISAEEEQIII QLHELWGNKW AKIARKLPGR TDNEIKNYWR THLRKKIQAQ  120
EGNFCKENNA KQDFLYQKGD TSSWNCNMEE YKSVADNIGT QESLDQYYEL SSLTYLSSPY  180
ETRLYDWMSE FSGDHDQSEM KIHGDCSGFC SCFCYLQWKA EDGTDNSILD SLGSLWDMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-27131172105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-27131172105C-Myb DNA-Binding Domain
1msf_C2e-27131172105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346520.0KM034652.1 Jatropha curcas clone JcMYB032 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082450.11e-167transcription factor MYB27
SwissprotQ9SCP19e-63MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A067JZ691e-175A0A067JZ69_JATCU; Uncharacterized protein
TrEMBLA0A097HUK11e-179A0A097HUK1_JATCU; MYB family protein
STRINGcassava4.1_029642m1e-114(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131692631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.12e-54myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]