PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00363.10

Common Name

JCGZ_20856, LOC105628389

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

FAR1

Protein Properties

Length: 254aa MW: 29551 Da PI: 5.3041

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00363.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.4	1.3e-24	76	166	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++ +GF+vr++++++s+ n++++ ++fvCskeg+r+++ ++++ + + tr gC+a++++ +++ kw+vtk+++eH+H+l+ Jcr4S00363.10 76 EFYISYGRCAGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVYRKDR-VlpPPPITREGCQAMIRLALRDGVKWVVTKFVKEHTHKLM 166 6****************************************99883333.234899******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-21	76	166	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MDDQSGHGFD SDESDLEIQA ESYEYGRIED DLPNNLDFCV SEEDNVSEQY VGLTINAEGL 60 EPYIGMEFNT RDEAREFYIS YGRCAGFTVR IHHNRRSRVN NQVIGQDFVC SKEGFRAKKY 120 VYRKDRVLPP PPITREGCQA MIRLALRDGV KWVVTKFVKE HTHKLMSPSK VPWRGSGKHL 180 ISEDEKDKRI RELSLELYNE RQKCKRRCAA YEEQLNLILK DLEKHTEHIS KKVNDVVQSI 240 REIEEEQSDD SDSG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012065173.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3
Refseq	XP_020532721.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	A0A067L5V8	0.0	A0A067L5V8_JATCU; Uncharacterized protein
STRING	cassava4.1_014469m	1e-170	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	7e-41	FAR1 family protein

Link Out ? help Back to Top
Entrez Gene	105628389

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]