PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00363.40

Common Name

JCGZ_20859, LOC105628392

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

FAR1

Protein Properties

Length: 256aa MW: 29615.1 Da PI: 6.0069

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00363.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.4	3.3e-25	83	174	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ Y++++GF++r++++++s ++++i+ r+fvCskeg+ + + +k ++++ +tr+ tr gC+a+l++ ++ gkw+++ + +eH+Hel+p Jcr4S00363.40 83 EFYEMYGRRMGFTIRNNRTRRSLKDNSIIGREFVCSKEGFCAGKCTKrENRNFSTRSATREGCNAMLRIAAKDGGKWVIYGFIKEHSHELNP 174 6*************************************887665525666679********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-22	83	174	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MLDSTLIFDR FVMASTSGQQ FHSNGNYRRW LDETFDGQET TDDELSDNLD GNDSIVQPSV 60 QSFPVALEPA IGMEFESAEN AREFYEMYGR RMGFTIRNNR TRRSLKDNSI IGREFVCSKE 120 GFCAGKCTKR ENRNFSTRSA TREGCNAMLR IAAKDGGKWV IYGFIKEHSH ELNPSKIPPR 180 RSHRIAFNED EKDLKIRELS TELHREKKKS AAYQEQLQMV LKYVEEHTQR LALKIESVAN 240 KVREFEFEEL DGSDSE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020532689.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X1
Refseq	XP_020532690.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X1
TrEMBL	A0A067LI00	0.0	A0A067LI00_JATCU; Uncharacterized protein
STRING	cassava4.1_014879m	1e-153	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15811	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	4e-48	FAR1 family protein

Link Out ? help Back to Top
Entrez Gene	105628392

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]