PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00363.50

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

FAR1

Protein Properties

Length: 261aa MW: 30343.5 Da PI: 7.0667

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00363.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.9	3.5e-28	55	142	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA+++GF +r+ +s+ks+++g+i++r++ C+keg+ +++k++ + + r+r+++r gC a+l vk++k gkw+vtk++ eHnH+l+ Jcr4S00363.50 55 FYDEYARRIGFLTRIISSRKSEHDGSIISRHLACNKEGFLKSQKTA-QVRIRKRESKREGCMAMLLVKRDKVGKWVVTKFVREHNHPLV 142 9***************************************9998.89999*********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-25	55	142	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MESTKADKEC LVEEKIEIAE SAIGDQTEDE ACEVDMNQEP YVGMIFESDK AAKTFYDEYA 60 RRIGFLTRII SSRKSEHDGS IISRHLACNK EGFLKSQKTA QVRIRKRESK REGCMAMLLV 120 KRDKVGKWVV TKFVREHNHP LVISSGQLTP YCSMICLRGD SVSQHLFFMN ENRPFGPIEF 180 VKDEKDRRIR ELSSELNRAN QQLAACQKQL QTFMTYIEEH TESLSRTVEG IVCNIRELES 240 ENRNYREDAR IRRTFQVSEQ I

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012065179.1	1e-162	protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
Swissprot	Q9SZL8	9e-24	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A067LH06	1e-160	A0A067LH06_JATCU; Uncharacterized protein
STRING	VIT_05s0102g00390.t01	1e-100	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-51	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]