PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00363.90

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

FAR1

Protein Properties

Length: 246aa MW: 28073.1 Da PI: 5.0688

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00363.90	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.9	1.3e-26	61	149	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k + r++r++tr gCka+++vk +k+gkw++tk++++HnH+l+ Jcr4S00363.90 61 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGNVRKPRPSTREGCKAMIHVKFDKSGKWVITKFVKDHNHPLV 149 9************************************999999989*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-24	61	149	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MLNQSDMDDK LDLDEGVGTG ENSAGHELVV QEGDIVMQEG DSIVEPHEGM EFESEDAAKI 60 FYDEYARRVG FVMRVMSCRR SERDGRILAR RLGCNKEGYC VSIRGKFGNV RKPRPSTREG 120 CKAMIHVKFD KSGKWVITKF VKDHNHPLVV APREARQTMP VILMESPMTE RLAVSLVPCV 180 GFLNINDCTL DAKQEGSNGY IVCQYYVDAL YFLQPKPYEI MILIEELKFQ NFQEAYYNPS 240 DYQCPC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214628	1e-115	AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012065183.1	1e-116	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A067L617	1e-109	A0A067L617_JATCU; Uncharacterized protein
STRING	XP_002533360.1	2e-95	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-74	FAR1 family protein