PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00368.20
Common NameJCGZ_08757, LOC105635810
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family TALE
Protein Properties Length: 646aa    MW: 70963.4 Da    PI: 8.1556
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00368.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.9e-103473841954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  Jcr4S00368.20 347 FEHflHPYPKDSDKRMLAKQTGLTRSQVSNWFINARVR 384
                    554459******************************88 PP
2BELL126.41e-40211282172
           BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    erqe+q+kkakL+s+l+eV++rY+qy++q+q+vissFe++ag+gsak Yt+lAl++iS++FrcLkdai++qi
  Jcr4S00368.20 211 ERQEIQMKKAKLISMLDEVEQRYRQYHHQMQIVISSFEQAAGIGSAKTYTALALQTISKQFRCLKDAITGQI 282
                    79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.3E-59164280IPR006563POX domain
PfamPF075262.2E-43169279IPR006563POX domain
PROSITE profilePS5007112.293325388IPR001356Homeobox domain
CDDcd000863.22E-12328389No hitNo description
SMARTSM003898.3E-10328392IPR001356Homeobox domain
SuperFamilySSF466895.99E-17329395IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-29331395IPR009057Homeodomain-like
PfamPF059201.8E-18345384IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MATYFHGNPE IQASAEGLQT LVLMNPTYVQ YSDTPPPPSN NLVFLNSGTN HLSPPPHLSH  60
APPNTQQFVG IPLDPTSHHD ASALHGLVPR IHYNLYNPID PSSAAREIPR AQQGLSLSLS  120
SQQQQQQPPP PPGYGSQAQA VSGEDMRVSG GSVSSGSGVT NGVSGMQGVL LSSKYLKAAQ  180
ELLDEVVNVV MGQPVENAGG GKRAAELTTA ERQEIQMKKA KLISMLDEVE QRYRQYHHQM  240
QIVISSFEQA AGIGSAKTYT ALALQTISKQ FRCLKDAITG QIKAANKSLG EEDCLGGKLE  300
GSRLKFVDHH LRQQRALQQL GMIQHNAWRP QRGLPERSVS VLRAWLFEHF LHPYPKDSDK  360
RMLAKQTGLT RSQVSNWFIN ARVRLWKPMV EEMYMEEIKE QERNGSDDKK SKSEQKENST  420
SKSVGHEKGS VNENQTKSFK SLDSSTNQNA PAISTSPVAG NVRNQSGFSL IGSSELEGLT  480
QASPKRHRST ELIQSPNSVP SINMDVKPGE TNNEQISMKF GSERQSRDGY SFIGAQTNFI  540
GGFGQYPIGE LGRFDTEQQF TPPRFSGNAV SLTLGLPHCE NLSLSATHQT FLPNQNIQLG  600
RRVEMGEPNE FGGINTSTPH SSTAYDSIDI QNRKRFAAQL LPDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16334392563Homeobox protein Meis2
3k2a_B2e-16334392563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012074314.10.0BEL1-like homeodomain protein 1
RefseqXP_012074316.10.0BEL1-like homeodomain protein 1
RefseqXP_012074317.10.0BEL1-like homeodomain protein 1
RefseqXP_020535651.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ560.0BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A067KM800.0A0A067KM80_JATCU; Uncharacterized protein
STRINGcassava4.1_003045m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-158BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]