PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00379.70

Common Name

JCGZ_13996, LOC105643305

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 180aa MW: 19856.6 Da PI: 9.9079

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00379.70	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	46	68	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C + F ++ L H++ H Jcr4S00379.70 46 FECHFCRRAFANSQALGGHQNAH 68 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.87E-6	43	73	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.4E-4	44	72	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.697	46	73	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	48	68	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MAAETSSPSQ PSDRKPSALK LFGFPLTDHD DEIRDKTENC LESRKFECHF CRRAFANSQA 60 LGGHQNAHKR ERQRARRAQY HCDRRLLAAA PILSSHAMKS TSSSSIIYNG GFIRNIGVAA 120 KFRPSTSPLL LPSTPPRLYV AAQPFRVIAS TPSSFVEFPG KLISDEDAGI DLCLKLTPSV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012083798.1	1e-130	zinc finger protein 5
TrEMBL	A0A067K7K5	1e-129	A0A067K7K5_JATCU; Uncharacterized protein
STRING	cassava4.1_023288m	1e-68	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3903	24	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58070.1	4e-14	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	105643305

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]