PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00398.50
Common NameJCGZ_12391, LOC105639706
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HSF
Protein Properties Length: 288aa    MW: 31247.7 Da    PI: 5.4719
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00398.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.57.9e-37101022103
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d+ ++++isw+e+g++fvv+++ +fak++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++F++g+kell++i
  Jcr4S00398.50  10 FLTKTYQLVDDPITDDVISWNESGTTFVVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANENFRRGHKELLSEI 96 
                    9****************************************************************999.........******************* PP

                    XXXXXX CS
   HSF_DNA-bind  98 krkkse 103
                    +r+k++
  Jcr4S00398.50  97 RRRKTA 102
                    ***975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-38393IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.0E-61699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.22E-33799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.5E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAQRSVPAPF LTKTYQLVDD PITDDVISWN ESGTTFVVWK TADFAKDLLP NYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANENFRRGHK ELLSEIRRRK TASPAPNQTP VAGKSGGVGI  120
AASPSNSGED LGSTSTSSPD SKNPGSVETA ATMTATAQFA DLSGENEKLK KDNEMLSSEL  180
AQAKKQCDEL IAFLTEYVKV GPDQINRIMR QGSSCGSTLD GLVSGATAGA DDHDDDESGN  240
KDDEGDDGGK VQSFKLFGVL LEGKTKKRGR VENIGFAGPH AKEIKICN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-27510125131Heat shock factor protein 1
5d5v_B7e-27510125131Heat shock factor protein 1
5d5v_D7e-27510125131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079229.10.0heat shock factor protein HSF24
SwissprotP223351e-119HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A067KI290.0A0A067KI29_JATCU; Uncharacterized protein
STRINGcassava4.1_013185m1e-170(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-88heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]