PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00420.60
Common NameJCGZ_24638, LOC105631663
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family M-type_MADS
Protein Properties Length: 186aa    MW: 21421 Da    PI: 7.3568
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00420.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.81e-162961436
                   -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEE CS
         SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaeva 36
                   e    r+vtfskR+ gi+KKA ELS+LC+a+va
  Jcr4S00420.60 29 EKINSRYVTFSKRKSGIFKKATELSTLCGADVA 61
                   556679*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-161873IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.2261861IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-171861IPR002100Transcription factor, MADS-box
CDDcd001201.55E-191961No hitNo description
PRINTSPR004042.1E-112040IPR002100Transcription factor, MADS-box
PfamPF003196.6E-162761IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-114055IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MDITNNRQQQ EQQRKTSKGR QKIEIKKVEK INSRYVTFSK RKSGIFKKAT ELSTLCGADV  60
ARRKTITVTY WKSSSSSAVT ETEQEQEYKK SLTRLAEIER AVDVIRNETN KKSNGEFWWN  120
LPVDNVEKEE LEGYKESLEE LKKNVLIKID EMASHNASGE TGIINQFIEG QNDGLDALDV  180
GFNFEY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012069227.11e-111agamous-like MADS-box protein AGL62
TrEMBLA0A067L9641e-110A0A067L964_JATCU; Uncharacterized protein
STRINGcassava4.1_023979m1e-56(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.22e-14AGAMOUS-like 71
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]