PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00424.30

Common Name

JCGZ_21436

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

LSD

Protein Properties

Length: 169aa MW: 18395 Da PI: 6.4841

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00424.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43.8	4.1e-14	49	73	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYPrGA++VRC++C+ V Jcr4S00424.30 49 CGSCRSLLSYPRGARHVRCSCCQMV 73 ***********************88 PP
2	zf-LSD1	43	7.5e-14	87	111	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GA+sV+C++C++V Jcr4S00424.30 87 CGKCTVLLMYPYGASSVQCSSCHFV 111 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.7E-16	46	76	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.3E-11	49	73	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	5.6E-11	84	112	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.9E-12	87	111	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MKSTEAEAMV EEKHEEEEGP PPGWQSIPPA EPSAPPHRPP SSEMAQMVCG SCRSLLSYPR 60 GARHVRCSCC QMVNFVLEAH EVGQVNCGKC TVLLMYPYGA SSVQCSSCHF VTEIGEATMV 120 CNSGAPSPNF KCCSVSGLRG VLILKTAGRI WHRNWMVFTS SDDGFPARE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012091597.1	2e-78	protein LOL2
Swissprot	O65426	9e-35	LOL2_ARATH; Protein LOL2
TrEMBL	A0A067JLS4	1e-121	A0A067JLS4_JATCU; Uncharacterized protein
STRING	XP_009338990.1	5e-42	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13026	31	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-34	lsd one like 2

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]