PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00455.40

Common Name

JCGZ_25590

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GRAS

Protein Properties

Length: 382aa MW: 43196.9 Da PI: 7.6145

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00455.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	311.4	2e-95	34	381	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 l++lLl+c ++ ssg+l++a+a+L+++sel+s +gd++qRlaa f+ +La rl++++++lykal+ +++ ++ +a lf ++P++ f ++ Jcr4S00455.40 34 LIQLLLKCSNHASSGNLHRANACLWEISELSSVSGDSIQRLAARFASGLAIRLVKHWPGLYKALNHDQKP---KINLEQANALFARAFPYFGFVNI 126 689*************************************************************9999...6777778889********* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192 + +++++a+ +e+ +Hi+D++ + + W+aLl++L p+gpp+l+iT +++ +k le++g+rL k A+ l++pf+fn+l + +l d++++ Jcr4S00455.40 127 VIVRTLVQAMTNENIIHIVDLGSTDPKLWVALLHSLVHLPNGPPHLKITCLNR----DKAILEKLGQRLVKEAAMLDIPFQFNPL-SVSLRDVTID 217 *************************************************....9**********************5.889*** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvEr 287 +++v++gEala ++l+lh ll e+ ++ + eqea+ n +++++rf+e l+yysa+fds+++ l++ s eer ++E+ Jcr4S00455.40 218 MIKVRSGEALAFISILNLHILLTEDDRVDA-----------------HFGEQEANNNLNRLVDRFVEGLHYYSAIFDSIDSALGNLSnEERLVLEE 296 *****************955555544.................589*******************************99566777777 PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + +grei+n+vaceg er erhe+++kW rl++ GFkpv+l ++ ++ak +++ ++ +gy++ +e+ sl+++W+drpL++vSaW+ Jcr4S00455.40 297 M-FGREIENIVACEGLERCERHERYGKWMVRLTRGGFKPVRLWYNFDEEAKQIINSFG-KGYKIISEKSSLMICWQDRPLYAVSAWT 381 7.****************************************************.9************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.001	8	362	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.1E-93	34	381	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MSSLLKPDIT LSLALSSSSP IHETLNAEKR GIRLIQLLLK CSNHASSGNL HRANACLWEI 60 SELSSVSGDS IQRLAARFAS GLAIRLVKHW PGLYKALNHD QKPKINLEQA NALFARAFPY 120 FGFVNIVIVR TLVQAMTNEN IIHIVDLGST DPKLWVALLH SLVHLPNGPP HLKITCLNRD 180 KAILEKLGQR LVKEAAMLDI PFQFNPLSVS LRDVTIDMIK VRSGEALAFI SILNLHILLT 240 EDDRVDAHFG EQEANNNLNR LVDRFVEGLH YYSAIFDSID SALGNLSNEE RLVLEEMFGR 300 EIENIVACEG LERCERHERY GKWMVRLTRG GFKPVRLWYN FDEEAKQIIN SFGKGYKIIS 360 EKSSLMICWQ DRPLYAVSAW TC

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MSSLLKPDIT LSLALSSSSP IHETLNAEKR GIRLIQLLLK CSNHASSGNL HRANACLWEI  60
SELSSVSGDS IQRLAARFAS GLAIRLVKHW PGLYKALNHD QKPKINLEQA NALFARAFPY  120
FGFVNIVIVR TLVQAMTNEN IIHIVDLGST DPKLWVALLH SLVHLPNGPP HLKITCLNRD  180
KAILEKLGQR LVKEAAMLDI PFQFNPLSVS LRDVTIDMIK VRSGEALAFI SILNLHILLT  240
EDDRVDAHFG EQEANNNLNR LVDRFVEGLH YYSAIFDSID SALGNLSNEE RLVLEEMFGR  300
EIENIVACEG LERCERHERY GKWMVRLTRG GFKPVRLWYN FDEEAKQIIN SFGKGYKIIS  360
EKSSLMICWQ DRPLYAVSAW TC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-49	28	381	12	378	Protein SCARECROW
5b3h_D	3e-49	28	381	12	378	Protein SCARECROW
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM405288	0.0	KM405288.1 Jatropha curcas GRAS25 protein (GRAS25) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012088061.1	0.0	scarecrow-like protein 3
TrEMBL	A0A067JXN3	0.0	A0A067JXN3_JATCU; Uncharacterized protein
STRING	cassava4.1_030344m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15813	10	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	2e-65	scarecrow-like 3

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]