PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00460.80

Common Name

JCGZ_25628

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

G2-like

Protein Properties

Length: 240aa MW: 27684.9 Da PI: 9.0571

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00460.80	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.3	3.4e-28	176	229	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +r+ Wtp LH++Fv a++ LGG+e+AtPk+i+++m+++gLt ++vkSHLQkYR+ Jcr4S00460.80 176 NRRSWTPPLHAKFVMALHMLGGPEVATPKQIRDHMQIDGLTTNQVKSHLQKYRI 229 799**************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.53E-16	173	232	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.8E-23	175	230	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.2E-23	175	229	IPR006447	Myb domain, plants
Pfam	PF00249	8.4E-9	177	228	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MSSSSPFELT LGLKLSYVPK SLSELIRDLS KTESDEVKLL VLNDQLLKYQ EELISVKVFK 60 QDLPQCRLLL IDAVEKLKEE INKIKIGMGL EAAERCLAKD AIATKKRDFE EQQSFLDLNN 120 PSFDQQWTNP THHRDKRQAG LFGPMPRAEE VPMNLNLNAT EEPKLKPLTQ PIWRNNRRSW 180 TPPLHAKFVM ALHMLGGPEV ATPKQIRDHM QIDGLTTNQV KSHLQKYRII WRSSQYNTTE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012088113.1	1e-179	uncharacterized protein LOC105646787
TrEMBL	A0A067JKC6	1e-177	A0A067JKC6_JATCU; Uncharacterized protein
STRING	XP_002525933.1	3e-76	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14866	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	2e-27	G2-like family protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]