PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00483.110

Common Name

JCGZ_25736, LOC105646886

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

HB-other

Protein Properties

Length: 203aa MW: 22183.3 Da PI: 7.507

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00483.110	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.9	6.1e-17	20	77	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-.HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLt.erqVkvWFqNrRakekk 57 ++kR t++qle+Le+ ++ + yps++ r+eL+ +lgL+ +rq ++WF+ rR k++k Jcr4S00483.110 20 KSKRKMKTASQLEILEKTYAVETYPSESLRAELSVQLGLSaDRQLQMWFCHRRLKDRK 77 689**********************************8579***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-16	4	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.03E-13	16	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.058	17	78	IPR001356	Homeobox domain
SMART	SM00389	9.6E-13	19	82	IPR001356	Homeobox domain
CDD	cd00086	1.06E-14	20	77	No hit	No description
Pfam	PF00046	1.4E-14	20	77	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MDGSGGAADG EKKKPEGEVK SKRKMKTASQ LEILEKTYAV ETYPSESLRA ELSVQLGLSA 60 DRQLQMWFCH RRLKDRKAPL VKRQPKDSPA PSGEDMGAVA EVGNEHMLVP ASGTSPFGHG 120 MDPRRVVART PGVAVPRLAP EMSSVRRYYE PQQSIAELRA ISFVEAQLGE PLREDGPILG 180 MEFDPLPPDA FGAPIGNFAH RCC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012088211.1	1e-127	homeobox-DDT domain protein RLT2 isoform X1
Swissprot	Q9FFH1	1e-47	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A067JX12	1e-125	A0A067JX12_JATCU; Uncharacterized protein
STRING	cassava4.1_033420m	1e-100	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15781	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	4e-50	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Entrez Gene	105646886

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]