PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00483.60

Common Name

JCGZ_25732, LOC105646881

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

HD-ZIP

Protein Properties

Length: 194aa MW: 22489.4 Da PI: 8.7989

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00483.60	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.3	2e-16	20	72	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++ ++q+++Le+ F+ n++++a+ + +LA +lgL+ qV +W+qNrRa++k Jcr4S00483.60 20 KKRLARDQIQILESNFYPNQKLNADLKLDLAYQLGLPPIQVAIWYQNRRARHK 72 566889*********************************************99 PP
2	HD-ZIP_I/II	87.7	1.5e-28	19	110	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 k+rl+++q+++LE++F ++kL+ + K +la +Lgl p qva+W+qnrRAR+k+ E++ye +++++ ++ +e+ rL+kev L+ el++ Jcr4S00483.60 19 SKKRLARDQIQILESNFYPNQKLNADLKLDLAYQLGLPPIQVAIWYQNRRARHKMEAKEHEYENIQEQLRNVLAEKIRLQKEVLMLKCELDK 110 59************************************************************************************999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.03E-15	7	73	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.868	14	74	IPR001356	Homeobox domain
SMART	SM00389	4.7E-12	16	78	IPR001356	Homeobox domain
CDD	cd00086	2.28E-10	17	72	No hit	No description
Pfam	PF00046	4.7E-14	20	72	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.0E-15	22	81	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	49	72	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MNSHFHQSQT LSHHPTKASK KRLARDQIQI LESNFYPNQK LNADLKLDLA YQLGLPPIQV 60 AIWYQNRRAR HKMEAKEHEY ENIQEQLRNV LAEKIRLQKE VLMLKCELDK AQEMLVLASN 120 RSTTTLLSGS TSDDRRANSQ SSENTTYSWL ATCKFPEEEL YTCLTFPVNM RQNNHGLLAK 180 SVNPNNDTNS DFKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012088207.1	1e-144	homeobox-leucine zipper protein ATHB-52
TrEMBL	A0A067JVR1	1e-143	A0A067JVR1_JATCU; Uncharacterized protein
STRING	POPTR_0017s04820.1	2e-54	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16535	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	9e-23	homeobox protein 52

Link Out ? help Back to Top
Entrez Gene	105646881

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]