PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00483.80

Common Name

JCGZ_25734, LOC105646883

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NAC

Protein Properties

Length: 302aa MW: 34046.2 Da PI: 9.0303

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00483.80	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	110.1	2.6e-34	66	206	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....tk..sgy 82 lp+G++F+Ptd+el+ e+L+ kv+++ ++l+ +i+ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+ t+ + + Jcr4S00483.80 66 LPAGVKFDPTDQELL-EHLEGKVKSDAHKLHPlidefipTIEGEnGICYTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKvhtdTEggETR 159 799**********.99**9994443233444333665557******.555555677**************745553344667 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+++v++ +g+++g kk+Lv+y g+++k+ekt+Wvmh+y+l Jcr4S00483.80 160 WHKTGKTRPVFV-GGKVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 206 ********.9*********6657999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.15E-38	59	225	IPR003441	NAC domain
PROSITE profile	PS51005	34	66	225	IPR003441	NAC domain
Pfam	PF02365	5.7E-16	67	206	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MTWCNDCNDV QTIDRSSPTS SNNNNNNNNA SVLAQRHKET LIRCCPSCGH QIKCHDQARI 60 HDLPGLPAGV KFDPTDQELL EHLEGKVKSD AHKLHPLIDE FIPTIEGENG ICYTHPEKLP 120 GVSKDGLIRH FFHRPSKAYT TGTRKRRKVH TDTEGGETRW HKTGKTRPVF VGGKVKGYKK 180 ILVLYTNYGK QRKPEKTNWV MHQYHLGNNE EEKDGELVVS KVFYQTQPRQ CGSVLNKDSL 240 SSKLKGLQSG HEGSNNSLKN SNLVEYYSPS FISFDQGSQT RANPPHQLLP HFAVHDGSSF 300 IP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC775373	0.0	KC775373.1 Jatropha curcas NAC transcription factor 095 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012088209.1	0.0	NAC domain-containing protein 73
Swissprot	O49459	1e-129	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	R4NEY5	0.0	R4NEY5_JATCU; NAC transcription factor 095
STRING	XP_002517849.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-122	NAC domain containing protein 73

Link Out ? help Back to Top
Entrez Gene	105646883

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508] Wu Z, et al. Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.). PLoS ONE, 2015. 10(6): p. e0131890 [PMID:26125188]