PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00497.140
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ARF
Protein Properties Length: 768aa    MW: 85253 Da    PI: 6.5138
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00497.140genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.42.7e-23128228198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+lt sd++++g +++ +k+a+e+     +++++ +++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +++
  Jcr4S00497.140 128 FCKILTASDTSTHGGFSVLRKHATEClppldMNQSTPTQELAAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGDNG 220
                     99****************************9445555669************************************************..34899 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                     el+v+v+r
  Jcr4S00497.140 221 ELRVGVRR 228
                     99****98 PP
2Auxin_resp101.88.9e-34254332182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     a+ha++t++ F v+Y+Pr+  s+F++ ++k+++a+++ +svGmRfkm+fe+e+s+err++Gt+vgv d++p +W++SkWrsL
  Jcr4S00497.140 254 ASHAVTTQTLFVVYYKPRT--SQFIIGLNKYLAAVNHGFSVGMRFKMRFEGEESPERRFTGTIVGVGDISP-QWSGSKWRSL 332
                     689***************6..9***********************************************99.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-40117257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-40122243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-19126228No hitNo description
PfamPF023623.0E-21128228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.069128230IPR003340B3 DNA binding domain
SMARTSM010191.0E-21128230IPR003340B3 DNA binding domain
PfamPF065079.2E-32254332IPR010525Auxin response factor
PfamPF023092.9E-11578674IPR033389AUX/IAA domain
SuperFamilySSF542773.04E-12584666No hitNo description
PROSITE profilePS5174525.001590671IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MAHVESNPRG GSISHGERGG DDLYTELWKA CAGPLVEVPR PGERVFYFPQ GHMEQLEAST  60
NQELTQQIPR FNLPSKILCR VVHIQLLAEQ ETDEVYAQIT LHPEPDQTEP TSPDSCLPEP  120
QRQTVHSFCK ILTASDTSTH GGFSVLRKHA TECLPPLDMN QSTPTQELAA KDLHGYEWRF  180
KHIFRGQPRR HLLTTGWSTF VTSKRLVAGD AFVFLRGDNG ELRVGVRRLA RQQSPMPSSV  240
ISSQSMHLGV LATASHAVTT QTLFVVYYKP RTSQFIIGLN KYLAAVNHGF SVGMRFKMRF  300
EGEESPERRF TGTIVGVGDI SPQWSGSKWR SLRIQWDEPA TIQRPERVSS WEIEPFAASA  360
SINIPQTVVK SKRPRPVDTP TSEITTNSAA SPFWYHGSTQ SHEFNQLGSV AETQSCESQV  420
FWSMRQKEID SNLLNSNSCG NSRVQPESIW PSSPHMNVSL SLFPDSTEDN RTITTQPVIS  480
GYASPIPSRQ INNLIHDQVE KGKKYENSVG CRLFGIDITS NSNAAATPEK EALCPTVDSH  540
GTEGPAPASS DSDKAQNMDV SNPLKDQKQG ASEVVPRETH SKLGSTSSTR TRTKVQMQGV  600
AVGRAVDLTV LKGYGDLIKE LEEMFEIKGE LSTRDKWAVV FTDDEGDMML VGDDPWPEFC  660
KMVRKILIYS SEEVKKMSTS SKFLASSLED EEGAFIGGSV CSVFFELAVD GSRVKDKRNL  720
GLGSLTKDVA GKDCQKRWGN LEKPGLEMEI CVYLVYGLLV LGFLRRDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-175143567355Auxin response factor 1
4ldw_A1e-175143567355Auxin response factor 1
4ldw_B1e-175143567355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371375KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083194.10.0auxin response factor 18 isoform X2
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLA0A067K0910.0A0A067K091_JATCU; Auxin response factor
STRINGcassava4.1_002408m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.10.0auxin response factor 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]