PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00511.40
Common NameJCGZ_23886
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 147aa    MW: 17268.7 Da    PI: 7.504
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00511.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1133.3e-3551223127
            NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek..ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                    +G+rF P+deelv+++Lk k+ g++ ++ + i+e+d+++vePwd+p+++ ++++   wyfF++r++   +g+r nr+t+ g+Wk+ gk+ ++++  
  Jcr4S00511.40   5 VGYRFCPNDEELVNHFLKLKMLGHDDQV-SRIPEIDVLTVEPWDIPSMMPNNSNdgVWYFFCRRNH---NGQRLNRTTNVGFWKTIGKTLKIKD-- 94 
                    7************************999.77***************655443333599****9977...799****************999988.. PP

            NAM  97 gelvglkktLvfykgrapkgektdWvmheyr 127
                       + +k++Lvfy++ a+  ++t+W+mhey+
  Jcr4S00511.40  95 ---IATKQILVFYQNGANGRVRTNWIMHEYN 122
                    ...99********9999999**********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100535.5493141IPR003441NAC domain
PfamPF023653.8E-235122IPR003441NAC domain
SuperFamilySSF1019411.14E-415139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MAGEVGYRFC PNDEELVNHF LKLKMLGHDD QVSRIPEIDV LTVEPWDIPS MMPNNSNDGV  60
WYFFCRRNHN GQRLNRTTNV GFWKTIGKTL KIKDIATKQI LVFYQNGANG RVRTNWIMHE  120
YNPTFDFPVQ SDYVLCKLRQ MPEDNNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-22612218139Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM6007310.0HM600731.1 Jatropha curcas NAC transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001295704.11e-108NAC domain-containing protein 4-like
SwissprotF4JN356e-40NTL9_ARATH; Protein NTM1-like 9
TrEMBLR4NEX01e-107R4NEX0_JATCU; NAC transcription factor 070
STRINGcassava4.1_028212m5e-54(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.32e-42NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]
  3. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  4. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]