PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00517.40
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family M-type_MADS
Protein Properties Length: 193aa    MW: 21473.1 Da    PI: 8.5995
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00517.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.12.4e-28125174251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                    ri+n++ rqvtfskRr g+lKKA ELS+LCdaev viifsstgkly+y+s
  Jcr4S00517.40 125 RIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGKLYDYAS 174
                    8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.595116176IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-40116175IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.27E-27117176IPR002100Transcription factor, MADS-box
CDDcd002652.17E-37117175No hitNo description
PROSITE patternPS003500118172IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-28118138IPR002100Transcription factor, MADS-box
PfamPF003191.2E-25125172IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-28138153IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-28153174IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MGSRDKDQMT SHHQPLLSRL VVRPLVIDRG DGGVGDSDGG NDYEPGEVHR DPPPYSCQDR  60
YSDDPRWRSC GSGKDTRGGD VDGEGSDSGS SACIGKKLIK ERKELEFLIE QGKEKMGRGK  120
IVIRRIDNST SRQVTFSKRR SGLLKKAREL SILCDAEVGV IIFSSTGKLY DYASTRSDFY  180
LAFSSYIHKF MVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-20116186172MEF2C
5f28_B2e-20116186172MEF2C
5f28_C2e-20116186172MEF2C
5f28_D2e-20116186172MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A067KVR81e-104A0A067KVR8_JATCU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.13e-35AGAMOUS-like 44