PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00538.110

Common Name

JCGZ_20398, LOC105645621

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Dof

Protein Properties

Length: 274aa MW: 29329.3 Da PI: 7.0591

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00538.110	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	48.1	2.5e-15	43	71	35	63
zf-Dof 35 aCrryWtkGGalrnvPvGggrrknkksss 63 +C ryWt+GG+lrn+PvGgg+rknk+sss Jcr4S00538.110 43 NCPRYWTEGGSLRNIPVGGGSRKNKRSSS 71 8************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-9	32	68	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-9	43	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MDTAQWPQEI VVKPIEEIVT NTCPKPTGGL ERKARPQKEQ ALNCPRYWTE GGSLRNIPVG 60 GGSRKNKRSS SSSSSSTTTS SSSLISSKKL PDLVTPQSST HQNPNKSHEG QDLNLAFPST 120 THQGIRSFTE LIQLPSSINE SNSKNQISSS MSNNTAATTT TSHQLSALEL LTGISSRGLN 180 SFMPMPVQDP SSSVYTSGFP LHDFKPSLNF SLDGLGSGYG SLQGVQETAG GRLLFPFEDL 240 KQVSTTTEIE QNNREQGDST GYWTGTLGGG GGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243101	1e-32	AC243101.1 Gossypium arboreum clone GM203N05-jhe, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012086658.1	1e-160	dof zinc finger protein DOF4.6
Swissprot	Q8LAP8	7e-40	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A067JN14	1e-158	A0A067JN14_JATCU; Uncharacterized protein
STRING	POPTR_0003s14450.1	1e-118	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	7e-30	Dof family protein

Link Out ? help Back to Top
Entrez Gene	105645621

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]