PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00542.100

Common Name

JCGZ_16483, LOC105642195

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

S1Fa-like

Protein Properties

Length: 90aa MW: 10003.8 Da PI: 10.2219

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00542.100	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	137.6	2.9e-43	22	90	2	70
S1FA 2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 v+ veakG+nPGlivllvvggl+l fl+gny+lyvyaqk+lPP+kkkP+skkk+kre+lkqGv++PGe Jcr4S00542.100 22 VVNDVEAKGFNPGLIVLLVVGGLVLAFLIGNYVLYVYAQKTLPPKKKKPISKKKMKRERLKQGVSAPGE 90 5789****************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	3.0E-5	23	90	No hit	No description
Pfam	PF04689	1.5E-40	26	90	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MDDDFEFADH SPPSFQQRMG NVVNDVEAKG FNPGLIVLLV VGGLVLAFLI GNYVLYVYAQ 60 KTLPPKKKKP ISKKKMKRER LKQGVSAPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012082317.1	9e-60	DNA-binding protein S1FA
Swissprot	Q42337	1e-15	S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBL	A0A067KBA1	2e-58	A0A067KBA1_JATCU; Uncharacterized protein
STRING	Lus10023177	2e-37	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5409	33	55

Link Out ? help Back to Top
Entrez Gene	105642195

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]