PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00545.60

Common Name

JCGZ_02277, LOC105632090

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 152aa MW: 17480.2 Da PI: 9.4635

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00545.60	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.7	1.3e-05	2	43	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er RR++ ++ ++ L ++lP +K+ K +i ++A + I++L Jcr4S00545.60 2 CERYRREKEKKEYSALHSMLPLG-----TKNHKNSIMQMAAKRIQEL 43 69*****************97.....79************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.0E-7	1	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.084	1	43	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.31E-5	1	44	No hit	No description
SuperFamily	SSF47459	7.72E-9	2	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MCERYRREKE KKEYSALHSM LPLGTKNHKN SIMQMAAKRI QELSGYKEAL QRRNHELEVK 60 LAAIGIGNVR STKIKFKVAN PVSGADYIME VLKCLNSLGS KIRTIQSTFS HQELVAVMDI 120 ETEISDADVR KEVQRTLEDA ERKFHFHFPE GC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	5	12	RREKEKKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012069765.1	1e-110	transcription factor bHLH92
TrEMBL	A0A067L879	1e-108	A0A067L879_JATCU; Uncharacterized protein
STRING	XP_002517016.1	5e-59	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12572	27	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	3e-29	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	105632090

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]