PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00546.60
Common NameJCGZ_10297, LOC105635765
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ARR-B
Protein Properties Length: 574aa    MW: 64265 Da    PI: 6.3298
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00546.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like894.3e-28315369156
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                    k +++WtpeLH++Fv+aveqL G ++A+P++ile+mkv+gLt+++v+SHLQkYR++
  Jcr4S00546.60 315 KMKVDWTPELHKKFVHAVEQL-GVDQAIPSRILEVMKVEGLTRHNVASHLQKYRMH 369
                    5689*****************.********************************96 PP
2Response_reg26.43.6e-10201261109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                    vl+ d++ + +  +++ le  +y +v ++ d  eal  + +k   +++ ++ ++    +G+  +k +++++ +lp i++++    +++ +++  Ga
  Jcr4S00546.60  20 VLLLDEDSNSAGEIKSKLEAMDY-IVSVFCDENEALSAISKKPesFHVAIVEVSTNSNNGS--FKFLETAK-DLPTIMISDIHCLNTMMKCIAHGA 111
                    7889999999999**********.***************888778************9997..67777766.9*********************** PP

                    SEEEESS--HHHHHH CS
   Response_reg  95 kdflsKpfdpeelvk 109
                     +fl Kp ++++l++
  Jcr4S00546.60 112 VEFLPKPLSEDKLRN 126
                    ************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521725.12E-1416136IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.6E-1516168No hitNo description
PROSITE profilePS5011020.85219132IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.5E-720127IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.40E-721131No hitNo description
PROSITE profilePS5129414.594312371IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-27313372IPR009057Homeodomain-like
SuperFamilySSF466893.67E-18314372IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-24315369IPR006447Myb domain, plants
PfamPF002494.3E-8318367IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MVCTANDLSS WKDFPKGLRV LLLDEDSNSA GEIKSKLEAM DYIVSVFCDE NEALSAISKK  60
PESFHVAIVE VSTNSNNGSF KFLETAKDLP TIMISDIHCL NTMMKCIAHG AVEFLPKPLS  120
EDKLRNIWQH VVHKAFSASG NVLSESLKPV KDSLTSMLQL KVETEEPKNE NLESIEDVSP  180
AHENDHVQSP GIDKYPAPST PQLKQGARLL DDGDCQDHTT CSTEKESGEQ EGESKSVETT  240
CAMTEVTLQV DHPQSLSETI IKEEDDSADG VKNESNASSH PQNKESLNSP DGSAENPIKA  300
SSHHNSYGTR ANRKKMKVDW TPELHKKFVH AVEQLGVDQA IPSRILEVMK VEGLTRHNVA  360
SHLQKYRMHR RHILPKEDDR RWQQQREQIQ RSYYPHKPIM AYPPYHHSNH NFPLSPVYPV  420
WGAAGTHPAG VQMWGSPGYN PWPPAESWHW NPYTGMHADA WGCPVMPPTH TPYSSSPQNA  480
PGFHSFETVS NGCRTPQNLY ELHPECFRNG NGSQRKFLCN KACNEEVIDN VVKEAINKPW  540
LPLPLGLKPP STETVLAELS RQGISRIPPE NQRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-16320369655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012074247.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_012074248.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_012074249.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_012074250.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_020535640.10.0two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-144APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A067KJ370.0A0A067KJ37_JATCU; Uncharacterized protein
STRINGcassava4.1_004881m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-136ARR-B family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]