PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00585.10
Common NameJCGZ_12524, LOC105639991
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 194aa    MW: 21373.1 Da    PI: 8.8723
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00585.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188e-066991123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ykC+ C+ksF+++  L  H  +H
  Jcr4S00585.10 69 YKCKLCNKSFPNHQALAGHKASH 91
                   9******************9998 PP
2zf-C2H212.90.00034126148123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+++F++   L  H r+H
  Jcr4S00585.10 126 HECSICHRTFPSGQALGGHKRRH 148
                    78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.9E-96991No hitNo description
SMARTSM003559.0E-46991IPR015880Zinc finger, C2H2-like
PfamPF139123.0E-86993IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.3256991IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SuperFamilySSF576675.9E-9121148No hitNo description
PfamPF139122.1E-13125150IPR007087Zinc finger, C2H2
SMARTSM003550.051126148IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.245126148IPR007087Zinc finger, C2H2
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MPSNLLHNYK DHRSFETPAK RKRTKRSRTE NSPTEEEYLA LCLLMLAKGT TAATNYDHSS  60
PSPSLELCYK CKLCNKSFPN HQALAGHKAS HRKPVGVVDD DQSETASAFT TSKTISKVIS  120
VNVKTHECSI CHRTFPSGQA LGGHKRRHYD GGSKSGGTGC DGRFDSEKKG MDLSLISQHD  180
FDLNLPALPE LPMV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079586.11e-144zinc finger protein AZF2
SwissprotQ9SSW12e-34AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A067KAM01e-142A0A067KAM0_JATCU; Uncharacterized protein
STRINGcassava4.1_016481m3e-55(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.12e-40C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]