PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00587.150

Common Name

JCGZ_15706

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

LBD

Protein Properties

Length: 133aa MW: 15016.1 Da PI: 8.492

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00587.150	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.7	2.7e-40	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C++dC+++pyfp+++p++f +vhk++Gasn k+l+++p + r++a++sl+yeA++r++dPvyG+vg+i+ l q+++ ++++la Jcr4S00587.150 6 RCAACKHLRRRCPSDCIFSPYFPSNNPQRFSCVHKIYGASNTAKMLEQVPSHLRDKAADSLYYEAKCRMEDPVYGCVGTITLLYQHIHDAENQLA 100 6********************************************************************************************** PP DUF260 96 llkee 100 ++++e Jcr4S00587.150 101 KTRAE 105 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.292	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-39	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MTNSGRCAAC KHLRRRCPSD CIFSPYFPSN NPQRFSCVHK IYGASNTAKM LEQVPSHLRD 60 KAADSLYYEA KCRMEDPVYG CVGTITLLYQ HIHDAENQLA KTRAEIAVLL TTHHAQQSQA 120 TTNHISLPTQ TFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-35	7	106	12	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-35	7	106	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021649066.1	2e-62	LOB domain-containing protein 24-like
Swissprot	P59467	6e-51	LBD23_ARATH; LOB domain-containing protein 23
Swissprot	P59468	7e-51	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A067LB33	4e-96	A0A067LB33_JATCU; Uncharacterized protein
STRING	cassava4.1_026224m	4e-61	(Manihot esculenta)
STRING	XP_002530717.1	3e-61	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3697	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-52	LOB domain-containing protein 24

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]