PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00605.60
Common NameJCGZ_16751, LOC105628691
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 319aa    MW: 36388 Da    PI: 8.4774
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00605.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.65.7e-07158177120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    ++Cp C+k+F+r  nL+ H+
  Jcr4S00605.60 158 FSCPVCPKTFNRYNNLQMHM 177
                    89*****************9 PP
2zf-C2H215.84e-05242264123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +Cgk+F  k + ++H +++
  Jcr4S00605.60 242 FMCRKCGKPFAVKGDWRTHEKNC 264
                    89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.83E-6151180No hitNo description
Gene3DG3DSA:3.30.160.601.8E-5158177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.429158185IPR007087Zinc finger, C2H2
SMARTSM003550.027158180IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
SuperFamilySSF576673.86E-6226262No hitNo description
Gene3DG3DSA:3.30.160.605.8E-5229262IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035572242262IPR015880Zinc finger, C2H2-like
SMARTSM00355140268291IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MADPCPNFFT TGCFNFIPLH YHYSLVNSYS TSSPYYNLHL YSNNNKSSIQ YPPQKQAPPL  60
IEYLSPPKQE EEHRSFSSKS KEEERKMEEN GDNNETVAVA LHIGLPSPNS DLGSRVSPSL  120
TDKGEESTTV SVHSLKKLNK GQYWIPTPSQ ILVGPTQFSC PVCPKTFNRY NNLQMHMWGH  180
GSQYRKGPDS LRGTQPTGML RLPCYCCAQG CKHNIDHPKA RPLKDFRTLQ THYKRKHGIK  240
PFMCRKCGKP FAVKGDWRTH EKNCGRFWFC ICGSDFKHKR SLKDHIKAFG HGHAALGINS  300
LEEDDEFASE IEHEEDSSF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012065547.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-120ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A067LGZ50.0A0A067LGZ5_JATCU; Uncharacterized protein
STRINGXP_002526768.11e-160(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-121C2H2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  3. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]