PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00609.90
Common NameJCGZ_15828, LOC105630651
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family HD-ZIP
Protein Properties Length: 176aa    MW: 20776 Da    PI: 5.076
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00609.90genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-183790356
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV +WFqNrRa++k
  Jcr4S00609.90 37 KKRRLNLDQVKALEKNFEVENKLEPERKLRLAEELGLQPRQVAIWFQNRRARWK 90
                   4567899**********************************************9 PP
2HD-ZIP_I/II126.41.2e-4036128193
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    ekkrrl+ +qvk+LE++Fe e+kLeperK +la+eLglqprqva+WFqnrRAR+ktkqlE+dye+Lk+ y+alk + +++eke+e+L++++ke
  Jcr4S00609.90  36 EKKRRLNLDQVKALEKNFEVENKLEPERKLRLAEELGLQPRQVAIWFQNRRARWKTKQLERDYEVLKADYEALKLNYSNIEKENESLNQQVKE 128
                    69****************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-192894IPR009057Homeodomain-like
PROSITE profilePS5007117.2973292IPR001356Homeobox domain
SMARTSM003892.3E-163596IPR001356Homeobox domain
CDDcd000861.32E-133793No hitNo description
PfamPF000469.8E-163790IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.3E-194099IPR009057Homeodomain-like
PRINTSPR000318.3E-66372IPR000047Helix-turn-helix motif
PROSITE patternPS0002706790IPR017970Homeobox, conserved site
PRINTSPR000318.3E-67288IPR000047Helix-turn-helix motif
PfamPF021832.5E-1692133IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MKSQKSNQGY TREFQAMLDS LEEEDYAEEA IHTTTEKKRR LNLDQVKALE KNFEVENKLE  60
PERKLRLAEE LGLQPRQVAI WFQNRRARWK TKQLERDYEV LKADYEALKL NYSNIEKENE  120
SLNQQVKELK AKLREENADS SHSVKEECPV SESENNFSVQ SQSHELSDNN NFHGTI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18492RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067920.11e-124homeobox-leucine zipper protein ATHB-6
SwissprotP466672e-50ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5
TrEMBLA0A067KYZ31e-123A0A067KYZ3_JATCU; Uncharacterized protein
STRINGcassava4.1_014014m7e-90(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.26e-53homeobox protein 5
Publications ? help Back to Top
  1. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  5. Stamm P, et al.
    The Transcription Factor ATHB5 Affects GA-Mediated Plasticity in Hypocotyl Cell Growth during Seed Germination.
    Plant Physiol., 2017. 173(1): p. 907-917
    [PMID:27872245]