PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00628.50
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GRAS
Protein Properties Length: 486aa    MW: 54921.2 Da    PI: 6.9802
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00628.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS102.94.6e-321082171111
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfsh 95 
                    l++lLl+cA++v++g+ e+a+  L+++s+las dgd++qR+aayfteALa r+++  +++l +al+ ++ s   +see+ +++lf+e++P+lk+++
  Jcr4S00628.50 108 LIHLLLACANHVAAGSVENANISLEHISHLASADGDTIQRIAAYFTEALADRILKrGWPGLHRALTFTKRS--LVSEEILVQRLFFELFPFLKLAY 201
                    689**************************************************9989******99999887..7********************** PP

           GRAS  96 ltaNqaIleavegeer 111
                    +++NqaI+ea+ege++
  Jcr4S00628.50 202 VITNQAIVEAMEGEKM 217
                    *************987 PP
2GRAS239.11.9e-73221481170374
           GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll................................................... 214
                    ++l++pf+fn+ ++++ledl++e+Lrvk+gEalaV++vlqlh ll                                                   
  Jcr4S00628.50 221 KKLDIPFQFNP-IVSKLEDLDVESLRVKTGEALAVSSVLQLHALLaaddemhkrsspsaskaansnqfqralhisknqrtlgewlekdlvhvysas 315
                    799********.7999******************************************************************************** PP

           GRAS 215 ..........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                              + s     +  ++L+++++lsPk++v++eqe++ n+ +++er++eal++y+alfd+le+++ r+s er+kvE++l+g+ei+n++ac
  Jcr4S00628.50 316 pdsalsplslAPSP----KMGSFLNALWGLSPKLMVITEQESNSNGFTLMERVTEALNFYAALFDCLESTVTRASVERQKVEKMLFGEEIKNIIAC 407
                    *9997654433333....4666************************************************************************** PP

           GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    eg++r+erhe+lekW  rl+ aGF+ vpls++ + qa++ll+ ++ dgy+++ee+g+l+++W+drpL+svS Wr
  Jcr4S00628.50 408 EGTDRKERHEKLEKWILRLDLAGFGRVPLSYHGMLQASRLLQSYGYDGYKIKEENGCLFICWQDRPLFSVSGWR 481
                    *************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.31682461IPR005202Transcription factor GRAS
PfamPF035141.6E-29108217IPR005202Transcription factor GRAS
PfamPF035146.5E-71221481IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MLENNGSEVC ELNVEKHTAL RFFLAFELSF FVQVVFILSR GMRNSVLFFF TLFCPCATKH  60
QEMAPEDGAS SVTSSPLQFF PWVSLSPGYG SPYPWLRELK SEERGLCLIH LLLACANHVA  120
AGSVENANIS LEHISHLASA DGDTIQRIAA YFTEALADRI LKRGWPGLHR ALTFTKRSLV  180
SEEILVQRLF FELFPFLKLA YVITNQAIVE AMEGEKMKKL KKLDIPFQFN PIVSKLEDLD  240
VESLRVKTGE ALAVSSVLQL HALLAADDEM HKRSSPSASK AANSNQFQRA LHISKNQRTL  300
GEWLEKDLVH VYSASPDSAL SPLSLAPSPK MGSFLNALWG LSPKLMVITE QESNSNGFTL  360
MERVTEALNF YAALFDCLES TVTRASVERQ KVEKMLFGEE IKNIIACEGT DRKERHEKLE  420
KWILRLDLAG FGRVPLSYHG MLQASRLLQS YGYDGYKIKE ENGCLFICWQ DRPLFSVSGW  480
RFRRYD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-34914831380Protein SCARECROW
5b3h_D8e-34914831380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4052780.0KM405278.1 Jatropha curcas GRAS23 protein (GRAS23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068606.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-167SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A067KWA80.0A0A067KWA8_JATCU; GRAS23 protein
STRINGcassava4.1_006715m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-154scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]